miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3512 5' -43.6 NC_001623.1 + 108608 1.15 0.018619
Target:  5'- aCCAGUAAUUGCUACAACAACAGCAUCu -3'
miRNA:   3'- -GGUCAUUAACGAUGUUGUUGUCGUAG- -5'
3512 5' -43.6 NC_001623.1 + 109527 0.76 0.967027
Target:  5'- aCCAGgcGUaUGCgUACAACGGCGGC-UCg -3'
miRNA:   3'- -GGUCauUA-ACG-AUGUUGUUGUCGuAG- -5'
3512 5' -43.6 NC_001623.1 + 60751 0.74 0.992898
Target:  5'- gCCAac-GUUGCgUACAGCGACuGCAUCu -3'
miRNA:   3'- -GGUcauUAACG-AUGUUGUUGuCGUAG- -5'
3512 5' -43.6 NC_001623.1 + 45970 0.74 0.992898
Target:  5'- uCgGGUAAagUGCUGCGaucuuaauuACGGCGGCGUCc -3'
miRNA:   3'- -GgUCAUUa-ACGAUGU---------UGUUGUCGUAG- -5'
3512 5' -43.6 NC_001623.1 + 102893 0.73 0.995612
Target:  5'- aCAGUAAUUGUUccaucucuuucaACAGCcauuCAGCAUCc -3'
miRNA:   3'- gGUCAUUAACGA------------UGUUGuu--GUCGUAG- -5'
3512 5' -43.6 NC_001623.1 + 66029 0.72 0.996898
Target:  5'- -gAGUGGcgUGCUugAGCAACAGaGUCa -3'
miRNA:   3'- ggUCAUUa-ACGAugUUGUUGUCgUAG- -5'
3512 5' -43.6 NC_001623.1 + 11387 0.71 0.999233
Target:  5'- gCCA----UUGCgUACAACGACAGCcgCa -3'
miRNA:   3'- -GGUcauuAACG-AUGUUGUUGUCGuaG- -5'
3512 5' -43.6 NC_001623.1 + 23590 0.7 0.999702
Target:  5'- aCAGgcAggUGUUGCAcuGCAACGGCAg- -3'
miRNA:   3'- gGUCauUa-ACGAUGU--UGUUGUCGUag -5'
3512 5' -43.6 NC_001623.1 + 1413 0.7 0.999769
Target:  5'- uCCGGUGuugUGCgugACGcGCGACGGCAc- -3'
miRNA:   3'- -GGUCAUua-ACGa--UGU-UGUUGUCGUag -5'
3512 5' -43.6 NC_001623.1 + 22159 0.7 0.999769
Target:  5'- aCCAGcagcuggUGCcgUACAACAGCGGCGc- -3'
miRNA:   3'- -GGUCauua---ACG--AUGUUGUUGUCGUag -5'
3512 5' -43.6 NC_001623.1 + 14207 0.69 0.999865
Target:  5'- aCGGUcg-----GCGACAGCAGCGUCg -3'
miRNA:   3'- gGUCAuuaacgaUGUUGUUGUCGUAG- -5'
3512 5' -43.6 NC_001623.1 + 25441 0.69 0.999865
Target:  5'- aCCuGUuggcGAUUGUUAuCGACAACGGCGa- -3'
miRNA:   3'- -GGuCA----UUAACGAU-GUUGUUGUCGUag -5'
3512 5' -43.6 NC_001623.1 + 35350 0.69 0.999898
Target:  5'- aCguGUAcaagaUGCUAaauguggaaGACAACAGCAUCg -3'
miRNA:   3'- -GguCAUua---ACGAUg--------UUGUUGUCGUAG- -5'
3512 5' -43.6 NC_001623.1 + 64102 0.69 0.999898
Target:  5'- gCAGUAAccuaUACAAUAGCGGCGUg -3'
miRNA:   3'- gGUCAUUaacgAUGUUGUUGUCGUAg -5'
3512 5' -43.6 NC_001623.1 + 66709 0.69 0.999943
Target:  5'- cUCGGUagcGAUUGCaccgUACAACAAgAGCAa- -3'
miRNA:   3'- -GGUCA---UUAACG----AUGUUGUUgUCGUag -5'
3512 5' -43.6 NC_001623.1 + 37342 0.68 0.999958
Target:  5'- cCCAGggcgcuuGUUGgUGCGGCGGCGG-AUCg -3'
miRNA:   3'- -GGUCau-----UAACgAUGUUGUUGUCgUAG- -5'
3512 5' -43.6 NC_001623.1 + 120656 0.68 0.99997
Target:  5'- cUCGGaGGUcUGCaugUACAugAACGGCGUCg -3'
miRNA:   3'- -GGUCaUUA-ACG---AUGUugUUGUCGUAG- -5'
3512 5' -43.6 NC_001623.1 + 45409 0.68 0.999973
Target:  5'- uCCAGcauugcaucgGCUugGGCGGCcGCAUCg -3'
miRNA:   3'- -GGUCauuaa-----CGAugUUGUUGuCGUAG- -5'
3512 5' -43.6 NC_001623.1 + 12805 0.68 0.999984
Target:  5'- aCUAGUAGUUgaucGCUggaaACggUAACAGUGUCc -3'
miRNA:   3'- -GGUCAUUAA----CGA----UGuuGUUGUCGUAG- -5'
3512 5' -43.6 NC_001623.1 + 131534 0.68 0.999984
Target:  5'- gCAGUcuccgcaGCcGCAGCAGCAGCAg- -3'
miRNA:   3'- gGUCAuuaa---CGaUGUUGUUGUCGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.