miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3512 5' -43.6 NC_001623.1 + 45970 0.74 0.992898
Target:  5'- uCgGGUAAagUGCUGCGaucuuaauuACGGCGGCGUCc -3'
miRNA:   3'- -GgUCAUUa-ACGAUGU---------UGUUGUCGUAG- -5'
3512 5' -43.6 NC_001623.1 + 108480 0.66 0.999998
Target:  5'- gCCGGcgGAUUGgUGCAcgGCAuCAGCAa- -3'
miRNA:   3'- -GGUCa-UUAACgAUGU--UGUuGUCGUag -5'
3512 5' -43.6 NC_001623.1 + 100266 0.66 0.999998
Target:  5'- aUAGUAAauaGCUGCAAUuuuGAUAGCGUa -3'
miRNA:   3'- gGUCAUUaa-CGAUGUUG---UUGUCGUAg -5'
3512 5' -43.6 NC_001623.1 + 98594 0.66 0.999998
Target:  5'- uCCAGgguuuacuGUUGCgugacuCAACGACGGCcgUg -3'
miRNA:   3'- -GGUCau------UAACGau----GUUGUUGUCGuaG- -5'
3512 5' -43.6 NC_001623.1 + 81047 0.66 0.999998
Target:  5'- uUAGUAcgUGCgACAaaaacaaacGCAcCGGCGUCa -3'
miRNA:   3'- gGUCAUuaACGaUGU---------UGUuGUCGUAG- -5'
3512 5' -43.6 NC_001623.1 + 92824 0.66 0.999998
Target:  5'- aCAcGUAAUUgaacaugaGCUGCAACAAUccuuuGGCAUUg -3'
miRNA:   3'- gGU-CAUUAA--------CGAUGUUGUUG-----UCGUAG- -5'
3512 5' -43.6 NC_001623.1 + 101142 0.66 0.999998
Target:  5'- uCCGGUGcgUG-UGCGACGACGGg--- -3'
miRNA:   3'- -GGUCAUuaACgAUGUUGUUGUCguag -5'
3512 5' -43.6 NC_001623.1 + 71477 0.67 0.999989
Target:  5'- uCCGGcu-UUGCUACAaagaaaagugccGCAgcGCAGCGUg -3'
miRNA:   3'- -GGUCauuAACGAUGU------------UGU--UGUCGUAg -5'
3512 5' -43.6 NC_001623.1 + 120656 0.68 0.99997
Target:  5'- cUCGGaGGUcUGCaugUACAugAACGGCGUCg -3'
miRNA:   3'- -GGUCaUUA-ACG---AUGUugUUGUCGUAG- -5'
3512 5' -43.6 NC_001623.1 + 35350 0.69 0.999898
Target:  5'- aCguGUAcaagaUGCUAaauguggaaGACAACAGCAUCg -3'
miRNA:   3'- -GguCAUua---ACGAUg--------UUGUUGUCGUAG- -5'
3512 5' -43.6 NC_001623.1 + 25441 0.69 0.999865
Target:  5'- aCCuGUuggcGAUUGUUAuCGACAACGGCGa- -3'
miRNA:   3'- -GGuCA----UUAACGAU-GUUGUUGUCGUag -5'
3512 5' -43.6 NC_001623.1 + 23590 0.7 0.999702
Target:  5'- aCAGgcAggUGUUGCAcuGCAACGGCAg- -3'
miRNA:   3'- gGUCauUa-ACGAUGU--UGUUGUCGUag -5'
3512 5' -43.6 NC_001623.1 + 66029 0.72 0.996898
Target:  5'- -gAGUGGcgUGCUugAGCAACAGaGUCa -3'
miRNA:   3'- ggUCAUUa-ACGAugUUGUUGUCgUAG- -5'
3512 5' -43.6 NC_001623.1 + 102893 0.73 0.995612
Target:  5'- aCAGUAAUUGUUccaucucuuucaACAGCcauuCAGCAUCc -3'
miRNA:   3'- gGUCAUUAACGA------------UGUUGuu--GUCGUAG- -5'
3512 5' -43.6 NC_001623.1 + 1413 0.7 0.999769
Target:  5'- uCCGGUGuugUGCgugACGcGCGACGGCAc- -3'
miRNA:   3'- -GGUCAUua-ACGa--UGU-UGUUGUCGUag -5'
3512 5' -43.6 NC_001623.1 + 22159 0.7 0.999769
Target:  5'- aCCAGcagcuggUGCcgUACAACAGCGGCGc- -3'
miRNA:   3'- -GGUCauua---ACG--AUGUUGUUGUCGUag -5'
3512 5' -43.6 NC_001623.1 + 11387 0.71 0.999233
Target:  5'- gCCA----UUGCgUACAACGACAGCcgCa -3'
miRNA:   3'- -GGUcauuAACG-AUGUUGUUGUCGuaG- -5'
3512 5' -43.6 NC_001623.1 + 60751 0.74 0.992898
Target:  5'- gCCAac-GUUGCgUACAGCGACuGCAUCu -3'
miRNA:   3'- -GGUcauUAACG-AUGUUGUUGuCGUAG- -5'
3512 5' -43.6 NC_001623.1 + 109527 0.76 0.967027
Target:  5'- aCCAGgcGUaUGCgUACAACGGCGGC-UCg -3'
miRNA:   3'- -GGUCauUA-ACG-AUGUUGUUGUCGuAG- -5'
3512 5' -43.6 NC_001623.1 + 122383 0.66 1
Target:  5'- uCCGGccaagccGUUGgaGC-ACAGCAGCAUUg -3'
miRNA:   3'- -GGUCau-----UAACgaUGuUGUUGUCGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.