Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3517 | 3' | -58.5 | NC_001623.1 | + | 132072 | 1.11 | 0.000974 |
Target: 5'- aUCAACGCCGCCACUCCCAGCAGCAGCc -3' miRNA: 3'- -AGUUGCGGCGGUGAGGGUCGUCGUCG- -5' |
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3517 | 3' | -58.5 | NC_001623.1 | + | 87751 | 0.8 | 0.128504 |
Target: 5'- cCAACGCCGCCGCgCCC-GC-GCAGCc -3' miRNA: 3'- aGUUGCGGCGGUGaGGGuCGuCGUCG- -5' |
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3517 | 3' | -58.5 | NC_001623.1 | + | 87859 | 0.79 | 0.149998 |
Target: 5'- aCAACGCUGCCAUagcgUCUCAGUAcGCGGCg -3' miRNA: 3'- aGUUGCGGCGGUG----AGGGUCGU-CGUCG- -5' |
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3517 | 3' | -58.5 | NC_001623.1 | + | 66093 | 0.77 | 0.213265 |
Target: 5'- aUCAACGCCGUgAUugacgaucuguuUgCCGGCGGCGGCg -3' miRNA: 3'- -AGUUGCGGCGgUG------------AgGGUCGUCGUCG- -5' |
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3517 | 3' | -58.5 | NC_001623.1 | + | 120598 | 0.76 | 0.246792 |
Target: 5'- gCAugGCCGCCGCccugUCCaGGUGGUAGCa -3' miRNA: 3'- aGUugCGGCGGUG----AGGgUCGUCGUCG- -5' |
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3517 | 3' | -58.5 | NC_001623.1 | + | 131542 | 0.73 | 0.356603 |
Target: 5'- gCcuCGCCGCaguCUCCgcagccgCAGCAGCAGCa -3' miRNA: 3'- aGuuGCGGCGgu-GAGG-------GUCGUCGUCG- -5' |
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3517 | 3' | -58.5 | NC_001623.1 | + | 2150 | 0.73 | 0.381645 |
Target: 5'- -aGACGgCGCCGgUCUCGGCgcaAGCGGCu -3' miRNA: 3'- agUUGCgGCGGUgAGGGUCG---UCGUCG- -5' |
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3517 | 3' | -58.5 | NC_001623.1 | + | 29495 | 0.72 | 0.398412 |
Target: 5'- --uACGUgcCCACUCCCauuAGCGGCAGCa -3' miRNA: 3'- aguUGCGgcGGUGAGGG---UCGUCGUCG- -5' |
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3517 | 3' | -58.5 | NC_001623.1 | + | 75512 | 0.72 | 0.415644 |
Target: 5'- cCAcuGCGCCGCCg--CCCAG-AGUAGCg -3' miRNA: 3'- aGU--UGCGGCGGugaGGGUCgUCGUCG- -5' |
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3517 | 3' | -58.5 | NC_001623.1 | + | 111795 | 0.71 | 0.457871 |
Target: 5'- cCAcCGCCGCCGCcgCCUacuaaguuuucgauAGCGGCuAGCa -3' miRNA: 3'- aGUuGCGGCGGUGa-GGG--------------UCGUCG-UCG- -5' |
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3517 | 3' | -58.5 | NC_001623.1 | + | 35369 | 0.71 | 0.460645 |
Target: 5'- cCGACGCCGCCGCaCUUAauggaaAGCAGCa -3' miRNA: 3'- aGUUGCGGCGGUGaGGGUcg----UCGUCG- -5' |
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3517 | 3' | -58.5 | NC_001623.1 | + | 49957 | 0.7 | 0.508095 |
Target: 5'- aUAGCGCuuuaCGCUGCUCC--GCGGCGGCa -3' miRNA: 3'- aGUUGCG----GCGGUGAGGguCGUCGUCG- -5' |
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3517 | 3' | -58.5 | NC_001623.1 | + | 75681 | 0.7 | 0.527654 |
Target: 5'- gCAAauccuaaCGCUACUCUgGGCGGCGGCg -3' miRNA: 3'- aGUUgcg----GCGGUGAGGgUCGUCGUCG- -5' |
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3517 | 3' | -58.5 | NC_001623.1 | + | 78327 | 0.7 | 0.537538 |
Target: 5'- uUCGcCGCCGCCuuCUCCCAGUccuuugGGCGa- -3' miRNA: 3'- -AGUuGCGGCGGu-GAGGGUCG------UCGUcg -5' |
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3517 | 3' | -58.5 | NC_001623.1 | + | 87817 | 0.69 | 0.58779 |
Target: 5'- aCGuCGUCGCCGCg-CCAGCGuccgcGCAGCc -3' miRNA: 3'- aGUuGCGGCGGUGagGGUCGU-----CGUCG- -5' |
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3517 | 3' | -58.5 | NC_001623.1 | + | 105676 | 0.69 | 0.597963 |
Target: 5'- -gGGCGUCGCCAUguaCGGCcGCGGCu -3' miRNA: 3'- agUUGCGGCGGUGaggGUCGuCGUCG- -5' |
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3517 | 3' | -58.5 | NC_001623.1 | + | 89810 | 0.68 | 0.618377 |
Target: 5'- aUCGAUGCgGCCAggucgcuggaugUUaCCC-GCGGCGGCg -3' miRNA: 3'- -AGUUGCGgCGGU------------GA-GGGuCGUCGUCG- -5' |
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3517 | 3' | -58.5 | NC_001623.1 | + | 12638 | 0.68 | 0.638832 |
Target: 5'- -aAACGCCGCCAUUUUuuuaugacgCAGCA-CGGCg -3' miRNA: 3'- agUUGCGGCGGUGAGG---------GUCGUcGUCG- -5' |
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3517 | 3' | -58.5 | NC_001623.1 | + | 67394 | 0.68 | 0.645989 |
Target: 5'- aCAACGUCgGCguUUCCUucuugcucaucgauAGCGGCGGCg -3' miRNA: 3'- aGUUGCGG-CGguGAGGG--------------UCGUCGUCG- -5' |
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3517 | 3' | -58.5 | NC_001623.1 | + | 5520 | 0.68 | 0.659266 |
Target: 5'- cUCAACGCCacaaaacuuGCCAaaUCUuGUAGCAGCa -3' miRNA: 3'- -AGUUGCGG---------CGGUgaGGGuCGUCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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