miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3517 3' -58.5 NC_001623.1 + 2150 0.73 0.381645
Target:  5'- -aGACGgCGCCGgUCUCGGCgcaAGCGGCu -3'
miRNA:   3'- agUUGCgGCGGUgAGGGUCG---UCGUCG- -5'
3517 3' -58.5 NC_001623.1 + 5181 0.67 0.698799
Target:  5'- gCAGcCGCCGCCcUUCUUAGCcaggcugAGCGGUa -3'
miRNA:   3'- aGUU-GCGGCGGuGAGGGUCG-------UCGUCG- -5'
3517 3' -58.5 NC_001623.1 + 5520 0.68 0.659266
Target:  5'- cUCAACGCCacaaaacuuGCCAaaUCUuGUAGCAGCa -3'
miRNA:   3'- -AGUUGCGG---------CGGUgaGGGuCGUCGUCG- -5'
3517 3' -58.5 NC_001623.1 + 12638 0.68 0.638832
Target:  5'- -aAACGCCGCCAUUUUuuuaugacgCAGCA-CGGCg -3'
miRNA:   3'- agUUGCGGCGGUGAGG---------GUCGUcGUCG- -5'
3517 3' -58.5 NC_001623.1 + 18075 0.66 0.749126
Target:  5'- cUAGUGCCGUC-CuccagcaacucgUCCCAGCuGCGGCg -3'
miRNA:   3'- aGUUGCGGCGGuG------------AGGGUCGuCGUCG- -5'
3517 3' -58.5 NC_001623.1 + 20949 0.67 0.679612
Target:  5'- aCAauGCGCCGaCCguGCUgaaggCCCAgGCAGCGGUu -3'
miRNA:   3'- aGU--UGCGGC-GG--UGA-----GGGU-CGUCGUCG- -5'
3517 3' -58.5 NC_001623.1 + 29495 0.72 0.398412
Target:  5'- --uACGUgcCCACUCCCauuAGCGGCAGCa -3'
miRNA:   3'- aguUGCGgcGGUGAGGG---UCGUCGUCG- -5'
3517 3' -58.5 NC_001623.1 + 31873 0.67 0.677584
Target:  5'- gUUAACGCCGaCGCUCCUgccuguuugauuacgGGUucuaaaagacgaaacAGCAGCg -3'
miRNA:   3'- -AGUUGCGGCgGUGAGGG---------------UCG---------------UCGUCG- -5'
3517 3' -58.5 NC_001623.1 + 35369 0.71 0.460645
Target:  5'- cCGACGCCGCCGCaCUUAauggaaAGCAGCa -3'
miRNA:   3'- aGUUGCGGCGGUGaGGGUcg----UCGUCG- -5'
3517 3' -58.5 NC_001623.1 + 49957 0.7 0.508095
Target:  5'- aUAGCGCuuuaCGCUGCUCC--GCGGCGGCa -3'
miRNA:   3'- aGUUGCG----GCGGUGAGGguCGUCGUCG- -5'
3517 3' -58.5 NC_001623.1 + 65946 0.66 0.758719
Target:  5'- aCAugGCCGagcuggcgaCGCgagCCGGCAaGCAGCc -3'
miRNA:   3'- aGUugCGGCg--------GUGag-GGUCGU-CGUCG- -5'
3517 3' -58.5 NC_001623.1 + 66093 0.77 0.213265
Target:  5'- aUCAACGCCGUgAUugacgaucuguuUgCCGGCGGCGGCg -3'
miRNA:   3'- -AGUUGCGGCGgUG------------AgGGUCGUCGUCG- -5'
3517 3' -58.5 NC_001623.1 + 67394 0.68 0.645989
Target:  5'- aCAACGUCgGCguUUCCUucuugcucaucgauAGCGGCGGCg -3'
miRNA:   3'- aGUUGCGG-CGguGAGGG--------------UCGUCGUCG- -5'
3517 3' -58.5 NC_001623.1 + 75512 0.72 0.415644
Target:  5'- cCAcuGCGCCGCCg--CCCAG-AGUAGCg -3'
miRNA:   3'- aGU--UGCGGCGGugaGGGUCgUCGUCG- -5'
3517 3' -58.5 NC_001623.1 + 75681 0.7 0.527654
Target:  5'- gCAAauccuaaCGCUACUCUgGGCGGCGGCg -3'
miRNA:   3'- aGUUgcg----GCGGUGAGGgUCGUCGUCG- -5'
3517 3' -58.5 NC_001623.1 + 78327 0.7 0.537538
Target:  5'- uUCGcCGCCGCCuuCUCCCAGUccuuugGGCGa- -3'
miRNA:   3'- -AGUuGCGGCGGu-GAGGGUCG------UCGUcg -5'
3517 3' -58.5 NC_001623.1 + 87678 0.67 0.713806
Target:  5'- aCGACGuCCGCguUUCCCGccGCguacugagacgcuauGGCAGCg -3'
miRNA:   3'- aGUUGC-GGCGguGAGGGU--CG---------------UCGUCG- -5'
3517 3' -58.5 NC_001623.1 + 87751 0.8 0.128504
Target:  5'- cCAACGCCGCCGCgCCC-GC-GCAGCc -3'
miRNA:   3'- aGUUGCGGCGGUGaGGGuCGuCGUCG- -5'
3517 3' -58.5 NC_001623.1 + 87817 0.69 0.58779
Target:  5'- aCGuCGUCGCCGCg-CCAGCGuccgcGCAGCc -3'
miRNA:   3'- aGUuGCGGCGGUGagGGUCGU-----CGUCG- -5'
3517 3' -58.5 NC_001623.1 + 87859 0.79 0.149998
Target:  5'- aCAACGCUGCCAUagcgUCUCAGUAcGCGGCg -3'
miRNA:   3'- aGUUGCGGCGGUG----AGGGUCGU-CGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.