miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3526 5' -57.8 NC_001623.1 + 125729 0.66 0.797761
Target:  5'- aGCCAaGACGUuuGGCGCCuuAAGCg- -3'
miRNA:   3'- -UGGUaCUGCGcgCCGCGGcgUUUGaa -5'
3526 5' -57.8 NC_001623.1 + 105360 0.66 0.797761
Target:  5'- ----cGACGCuugaGCGGCGCUGuCAAACg- -3'
miRNA:   3'- ugguaCUGCG----CGCCGCGGC-GUUUGaa -5'
3526 5' -57.8 NC_001623.1 + 69168 0.66 0.769843
Target:  5'- cGCgGUGGCuggcacgcaCGCGGUGCCGuCAAACa- -3'
miRNA:   3'- -UGgUACUGc--------GCGCCGCGGC-GUUUGaa -5'
3526 5' -57.8 NC_001623.1 + 40716 0.67 0.740796
Target:  5'- uGCauugGAUGCGCGGCggguccaacuuGCCGCAaAACUg -3'
miRNA:   3'- -UGgua-CUGCGCGCCG-----------CGGCGU-UUGAa -5'
3526 5' -57.8 NC_001623.1 + 111799 0.67 0.700756
Target:  5'- uGCCAUGACGuUGCGagaGCGCgGCGuAACa- -3'
miRNA:   3'- -UGGUACUGC-GCGC---CGCGgCGU-UUGaa -5'
3526 5' -57.8 NC_001623.1 + 124019 0.67 0.700756
Target:  5'- uGCgaAUG-UGUGCGGCGCCGCGAu--- -3'
miRNA:   3'- -UGg-UACuGCGCGCCGCGGCGUUugaa -5'
3526 5' -57.8 NC_001623.1 + 109957 0.68 0.680344
Target:  5'- gGCCGUGugGaccaaCGCGGCGCCcucGCAcaAAUUg -3'
miRNA:   3'- -UGGUACugC-----GCGCCGCGG---CGU--UUGAa -5'
3526 5' -57.8 NC_001623.1 + 113241 0.69 0.617382
Target:  5'- uGCCGUGgaaaacuccaacuGCGCGCGcuaccaauGCGCCGaCAAGCg- -3'
miRNA:   3'- -UGGUAC-------------UGCGCGC--------CGCGGC-GUUUGaa -5'
3526 5' -57.8 NC_001623.1 + 37901 0.74 0.316731
Target:  5'- gACCAUGGCGCGgcgcauuuggaaCGGCGCgGCAGAa-- -3'
miRNA:   3'- -UGGUACUGCGC------------GCCGCGgCGUUUgaa -5'
3526 5' -57.8 NC_001623.1 + 80250 1.04 0.003016
Target:  5'- aACCAUGACGCGCGGCGCCGCAAACUUu -3'
miRNA:   3'- -UGGUACUGCGCGCCGCGGCGUUUGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.