Results 41 - 53 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
355 | 5' | -61.3 | AC_000011.1 | + | 8357 | 0.67 | 0.269115 |
Target: 5'- uACCAucuGGACCU-CCCGCGCGCccuggaaaaacuccuGcaagucaaccgcGCGCCg -3' miRNA: 3'- -UGGU---CUUGGAuGGGCGCGCG---------------C------------CGCGG- -5' |
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355 | 5' | -61.3 | AC_000011.1 | + | 9369 | 0.67 | 0.273201 |
Target: 5'- gACCG---UCUGCCCGUGCGC--CGCCg -3' miRNA: 3'- -UGGUcuuGGAUGGGCGCGCGccGCGG- -5' |
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355 | 5' | -61.3 | AC_000011.1 | + | 16402 | 0.67 | 0.273201 |
Target: 5'- uGCCGGAGCgCU-CgCCGgGCGUgaagaccacgguGGUGCCg -3' miRNA: 3'- -UGGUCUUG-GAuG-GGCgCGCG------------CCGCGG- -5' |
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355 | 5' | -61.3 | AC_000011.1 | + | 30918 | 0.67 | 0.280121 |
Target: 5'- cCCAGuACCgcgACCagcgaGgGCGCGGCuGCUc -3' miRNA: 3'- uGGUCuUGGa--UGGg----CgCGCGCCG-CGG- -5' |
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355 | 5' | -61.3 | AC_000011.1 | + | 23611 | 0.67 | 0.287179 |
Target: 5'- uGCCAGcuCCUcCUCGUGCuccGCGgGCGUCa -3' miRNA: 3'- -UGGUCuuGGAuGGGCGCG---CGC-CGCGG- -5' |
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355 | 5' | -61.3 | AC_000011.1 | + | 6456 | 0.67 | 0.287179 |
Target: 5'- uGCUGGAcccCCUGCCCcccuucugcucGCGCaaggGCGGaCGCCu -3' miRNA: 3'- -UGGUCUu--GGAUGGG-----------CGCG----CGCC-GCGG- -5' |
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355 | 5' | -61.3 | AC_000011.1 | + | 12639 | 0.66 | 0.300974 |
Target: 5'- -gCAGGGCCUguggggcgugcagGCCCcggucggggaccGCGCGaCGGUGUCg -3' miRNA: 3'- ugGUCUUGGA-------------UGGG------------CGCGC-GCCGCGG- -5' |
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355 | 5' | -61.3 | AC_000011.1 | + | 23792 | 0.66 | 0.301714 |
Target: 5'- cGCCuacgaguuGAACCUcuucuCgCCGCGCGUGccccccaaGCGCCa -3' miRNA: 3'- -UGGu-------CUUGGAu----G-GGCGCGCGC--------CGCGG- -5' |
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355 | 5' | -61.3 | AC_000011.1 | + | 3688 | 0.66 | 0.309192 |
Target: 5'- uGCC---GCCaGCgCCGUGCGCGGaaugGCCa -3' miRNA: 3'- -UGGucuUGGaUG-GGCGCGCGCCg---CGG- -5' |
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355 | 5' | -61.3 | AC_000011.1 | + | 18174 | 0.66 | 0.321448 |
Target: 5'- uUCAGAguGCuCUGCCaguucgcaugaggGCGgGCGGUGCCc -3' miRNA: 3'- uGGUCU--UG-GAUGGg------------CGCgCGCCGCGG- -5' |
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355 | 5' | -61.3 | AC_000011.1 | + | 13707 | 0.66 | 0.324568 |
Target: 5'- uGCCuGucguGCC-ACCgGCGUuuacggGCGGCGCUg -3' miRNA: 3'- -UGGuCu---UGGaUGGgCGCG------CGCCGCGG- -5' |
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355 | 5' | -61.3 | AC_000011.1 | + | 28399 | 0.66 | 0.324568 |
Target: 5'- uCCAucGCUUacaGCCUGUGCaCGGCGCUa -3' miRNA: 3'- uGGUcuUGGA---UGGGCGCGcGCCGCGG- -5' |
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355 | 5' | -61.3 | AC_000011.1 | + | 15503 | 0.66 | 0.332468 |
Target: 5'- cACCgguuGGGGCCUGCgCGCGCccaGCaagauguacggaGGCGCUc -3' miRNA: 3'- -UGG----UCUUGGAUGgGCGCG---CG------------CCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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