miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
355 5' -61.3 AC_000011.1 + 16009 0.7 0.175625
Target:  5'- cACCGGugugcGCgUGCCCGUGCGCaccCGCCc -3'
miRNA:   3'- -UGGUCu----UGgAUGGGCGCGCGcc-GCGG- -5'
355 5' -61.3 AC_000011.1 + 24248 0.69 0.180385
Target:  5'- gACCAGGugCUcauCaaGCGCGCGuCGCCc -3'
miRNA:   3'- -UGGUCUugGAu--GggCGCGCGCcGCGG- -5'
355 5' -61.3 AC_000011.1 + 5360 0.69 0.185258
Target:  5'- uGCU---ACCUGgCCGaCGCGCagGGCGCCg -3'
miRNA:   3'- -UGGucuUGGAUgGGC-GCGCG--CCGCGG- -5'
355 5' -61.3 AC_000011.1 + 11395 0.69 0.185258
Target:  5'- cCCAGGgucACCUcCUCGCGCGCGaucaggguGCGCa -3'
miRNA:   3'- uGGUCU---UGGAuGGGCGCGCGC--------CGCGg -5'
355 5' -61.3 AC_000011.1 + 13353 0.69 0.195353
Target:  5'- gGCCgcgaGGGugCUG-CCGCG-GCGGUGCCc -3'
miRNA:   3'- -UGG----UCUugGAUgGGCGCgCGCCGCGG- -5'
355 5' -61.3 AC_000011.1 + 17080 0.69 0.195353
Target:  5'- cACCucuGAcCCUG-CCGCGCGC-GCGCUa -3'
miRNA:   3'- -UGGu--CUuGGAUgGGCGCGCGcCGCGG- -5'
355 5' -61.3 AC_000011.1 + 15902 0.69 0.195353
Target:  5'- cGCCAGcGCCggcaggACCCGgagaCGCGCGGCcacgGCg -3'
miRNA:   3'- -UGGUCuUGGa-----UGGGC----GCGCGCCG----CGg -5'
355 5' -61.3 AC_000011.1 + 17243 0.69 0.211397
Target:  5'- cGCCAccACC-ACCgGCG-GCGGCGCg -3'
miRNA:   3'- -UGGUcuUGGaUGGgCGCgCGCCGCGg -5'
355 5' -61.3 AC_000011.1 + 24926 0.69 0.211397
Target:  5'- uCCGGAAuCCUGCCCGCcaccugcucGCGCuGC-CCu -3'
miRNA:   3'- uGGUCUU-GGAUGGGCG---------CGCGcCGcGG- -5'
355 5' -61.3 AC_000011.1 + 4039 0.69 0.211397
Target:  5'- uCCAGGGCCUA-CCGCGCGCGa---- -3'
miRNA:   3'- uGGUCUUGGAUgGGCGCGCGCcgcgg -5'
355 5' -61.3 AC_000011.1 + 15469 0.68 0.216992
Target:  5'- cCCAGGGCCUugUagaCGUaggggcagGUGCGGCGUCu -3'
miRNA:   3'- uGGUCUUGGAugG---GCG--------CGCGCCGCGG- -5'
355 5' -61.3 AC_000011.1 + 7303 0.68 0.222713
Target:  5'- --gAGGAUCuUGCCCGCGCGgGGCa-- -3'
miRNA:   3'- uggUCUUGG-AUGGGCGCGCgCCGcgg -5'
355 5' -61.3 AC_000011.1 + 8211 0.68 0.240648
Target:  5'- cGCCGaggucuGGACCUGCCuCcCGCGCGG-GCUc -3'
miRNA:   3'- -UGGU------CUUGGAUGG-GcGCGCGCCgCGG- -5'
355 5' -61.3 AC_000011.1 + 22483 0.68 0.240648
Target:  5'- cCCAGAACC-GCUgggggCGCaGCGUGGUGCa -3'
miRNA:   3'- uGGUCUUGGaUGG-----GCG-CGCGCCGCGg -5'
355 5' -61.3 AC_000011.1 + 21911 0.68 0.241267
Target:  5'- uACCAGuuccgcaacgugucCCUGCCCGCGgGCcaUGCCg -3'
miRNA:   3'- -UGGUCuu------------GGAUGGGCGCgCGccGCGG- -5'
355 5' -61.3 AC_000011.1 + 10963 0.68 0.249424
Target:  5'- cACCAGcuGGCCUuggagagggcgagggGCUgGCGCGCcugggGGCGUCg -3'
miRNA:   3'- -UGGUC--UUGGA---------------UGGgCGCGCG-----CCGCGG- -5'
355 5' -61.3 AC_000011.1 + 9495 0.67 0.253264
Target:  5'- aACgGGGACCccCCCGgccaccuggagaUGCGCGGCGgCg -3'
miRNA:   3'- -UGgUCUUGGauGGGC------------GCGCGCCGCgG- -5'
355 5' -61.3 AC_000011.1 + 10249 0.67 0.259774
Target:  5'- uGCUcgAGGACCU---CGCGCcCGGCGCCc -3'
miRNA:   3'- -UGG--UCUUGGAuggGCGCGcGCCGCGG- -5'
355 5' -61.3 AC_000011.1 + 8536 0.67 0.259774
Target:  5'- gGCCccGAGCCgccccugccGCCCgGCGCGCGuccuCGCCg -3'
miRNA:   3'- -UGGu-CUUGGa--------UGGG-CGCGCGCc---GCGG- -5'
355 5' -61.3 AC_000011.1 + 26458 0.67 0.266419
Target:  5'- cCCAGAuggGCCUGgCCGC---CGGUGCCg -3'
miRNA:   3'- uGGUCU---UGGAUgGGCGcgcGCCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.