miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
355 5' -61.3 AC_000011.1 + 12023 0.7 0.170978
Target:  5'- aGCCAccuCCUGauCCCGCGaugcggGCGGCGCUg -3'
miRNA:   3'- -UGGUcuuGGAU--GGGCGCg-----CGCCGCGG- -5'
355 5' -61.3 AC_000011.1 + 12276 0.78 0.038427
Target:  5'- gGCCAGGACCUuCUCGUGCGUGGgGUUg -3'
miRNA:   3'- -UGGUCUUGGAuGGGCGCGCGCCgCGG- -5'
355 5' -61.3 AC_000011.1 + 12639 0.66 0.300974
Target:  5'- -gCAGGGCCUguggggcgugcagGCCCcggucggggaccGCGCGaCGGUGUCg -3'
miRNA:   3'- ugGUCUUGGA-------------UGGG------------CGCGC-GCCGCGG- -5'
355 5' -61.3 AC_000011.1 + 13353 0.69 0.195353
Target:  5'- gGCCgcgaGGGugCUG-CCGCG-GCGGUGCCc -3'
miRNA:   3'- -UGG----UCUugGAUgGGCGCgCGCCGCGG- -5'
355 5' -61.3 AC_000011.1 + 13707 0.66 0.324568
Target:  5'- uGCCuGucguGCC-ACCgGCGUuuacggGCGGCGCUg -3'
miRNA:   3'- -UGGuCu---UGGaUGGgCGCG------CGCCGCGG- -5'
355 5' -61.3 AC_000011.1 + 15469 0.68 0.216992
Target:  5'- cCCAGGGCCUugUagaCGUaggggcagGUGCGGCGUCu -3'
miRNA:   3'- uGGUCUUGGAugG---GCG--------CGCGCCGCGG- -5'
355 5' -61.3 AC_000011.1 + 15503 0.66 0.332468
Target:  5'- cACCgguuGGGGCCUGCgCGCGCccaGCaagauguacggaGGCGCUc -3'
miRNA:   3'- -UGG----UCUUGGAUGgGCGCG---CG------------CCGCGG- -5'
355 5' -61.3 AC_000011.1 + 15750 0.71 0.149357
Target:  5'- cGCCGGuAC--GCCCGCGCcaagagccggcgGCGGCGCa -3'
miRNA:   3'- -UGGUCuUGgaUGGGCGCG------------CGCCGCGg -5'
355 5' -61.3 AC_000011.1 + 15798 0.79 0.034218
Target:  5'- cACCGGAGCacccccGCCaUGCGCGCGGCGCg -3'
miRNA:   3'- -UGGUCUUGga----UGG-GCGCGCGCCGCGg -5'
355 5' -61.3 AC_000011.1 + 15813 0.7 0.170978
Target:  5'- cGCCGGcucuuggcgcgGGCgUACCgGCGCGCGucCGCCa -3'
miRNA:   3'- -UGGUC-----------UUGgAUGGgCGCGCGCc-GCGG- -5'
355 5' -61.3 AC_000011.1 + 15902 0.69 0.195353
Target:  5'- cGCCAGcGCCggcaggACCCGgagaCGCGCGGCcacgGCg -3'
miRNA:   3'- -UGGUCuUGGa-----UGGGC----GCGCGCCG----CGg -5'
355 5' -61.3 AC_000011.1 + 15959 0.77 0.047043
Target:  5'- uCCGGGuCCUGCCgGCGC-UGGCGCCu -3'
miRNA:   3'- uGGUCUuGGAUGGgCGCGcGCCGCGG- -5'
355 5' -61.3 AC_000011.1 + 16009 0.7 0.175625
Target:  5'- cACCGGugugcGCgUGCCCGUGCGCaccCGCCc -3'
miRNA:   3'- -UGGUCu----UGgAUGGGCGCGCGcc-GCGG- -5'
355 5' -61.3 AC_000011.1 + 16353 0.7 0.153472
Target:  5'- cACCGGuugcACCUuccGCCCGCGCcacuGCacGCGCCg -3'
miRNA:   3'- -UGGUCu---UGGA---UGGGCGCG----CGc-CGCGG- -5'
355 5' -61.3 AC_000011.1 + 16402 0.67 0.273201
Target:  5'- uGCCGGAGCgCU-CgCCGgGCGUgaagaccacgguGGUGCCg -3'
miRNA:   3'- -UGGUCUUG-GAuG-GGCgCGCG------------CCGCGG- -5'
355 5' -61.3 AC_000011.1 + 16548 0.7 0.162012
Target:  5'- -gCAGGugCUGCcgaCCGCgGCGCcGCGCCg -3'
miRNA:   3'- ugGUCUugGAUG---GGCG-CGCGcCGCGG- -5'
355 5' -61.3 AC_000011.1 + 16624 0.77 0.051288
Target:  5'- cGCUuGAACC--CCCG-GCGCGGCGCCg -3'
miRNA:   3'- -UGGuCUUGGauGGGCgCGCGCCGCGG- -5'
355 5' -61.3 AC_000011.1 + 17080 0.69 0.195353
Target:  5'- cACCucuGAcCCUG-CCGCGCGC-GCGCUa -3'
miRNA:   3'- -UGGu--CUuGGAUgGGCGCGCGcCGCGG- -5'
355 5' -61.3 AC_000011.1 + 17243 0.69 0.211397
Target:  5'- cGCCAccACC-ACCgGCG-GCGGCGCg -3'
miRNA:   3'- -UGGUcuUGGaUGGgCGCgCGCCGCGg -5'
355 5' -61.3 AC_000011.1 + 18066 0.74 0.07873
Target:  5'- cGCCGGuGGCCgugGCCCGCGCGCGaC-CCg -3'
miRNA:   3'- -UGGUC-UUGGa--UGGGCGCGCGCcGcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.