Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
355 | 5' | -61.3 | AC_000011.1 | + | 8589 | 0.99 | 0.00092 |
Target: 5'- uACCAGAACCUA-CCGCGCGCGGCGCCg -3' miRNA: 3'- -UGGUCUUGGAUgGGCGCGCGCCGCGG- -5' |
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355 | 5' | -61.3 | AC_000011.1 | + | 15798 | 0.79 | 0.034218 |
Target: 5'- cACCGGAGCacccccGCCaUGCGCGCGGCGCg -3' miRNA: 3'- -UGGUCUUGga----UGG-GCGCGCGCCGCGg -5' |
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355 | 5' | -61.3 | AC_000011.1 | + | 12276 | 0.78 | 0.038427 |
Target: 5'- gGCCAGGACCUuCUCGUGCGUGGgGUUg -3' miRNA: 3'- -UGGUCUUGGAuGGGCGCGCGCCgCGG- -5' |
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355 | 5' | -61.3 | AC_000011.1 | + | 15959 | 0.77 | 0.047043 |
Target: 5'- uCCGGGuCCUGCCgGCGC-UGGCGCCu -3' miRNA: 3'- uGGUCUuGGAUGGgCGCGcGCCGCGG- -5' |
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355 | 5' | -61.3 | AC_000011.1 | + | 16624 | 0.77 | 0.051288 |
Target: 5'- cGCUuGAACC--CCCG-GCGCGGCGCCg -3' miRNA: 3'- -UGGuCUUGGauGGGCgCGCGCCGCGG- -5' |
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355 | 5' | -61.3 | AC_000011.1 | + | 2976 | 0.76 | 0.054323 |
Target: 5'- uACCAGAugCUgACCUGCGCGgCGGgaacaGCCa -3' miRNA: 3'- -UGGUCUugGA-UGGGCGCGC-GCCg----CGG- -5' |
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355 | 5' | -61.3 | AC_000011.1 | + | 11297 | 0.76 | 0.057532 |
Target: 5'- gACCAGGuugGCCgcgGCCaCGUGCGCGcGCGCg -3' miRNA: 3'- -UGGUCU---UGGa--UGG-GCGCGCGC-CGCGg -5' |
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355 | 5' | -61.3 | AC_000011.1 | + | 18066 | 0.74 | 0.07873 |
Target: 5'- cGCCGGuGGCCgugGCCCGCGCGCGaC-CCg -3' miRNA: 3'- -UGGUC-UUGGa--UGGGCGCGCGCcGcGG- -5' |
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355 | 5' | -61.3 | AC_000011.1 | + | 26723 | 0.73 | 0.093263 |
Target: 5'- cUCAGGuguCCaGCUgGCGgGCGGCGCCa -3' miRNA: 3'- uGGUCUu--GGaUGGgCGCgCGCCGCGG- -5' |
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355 | 5' | -61.3 | AC_000011.1 | + | 24677 | 0.71 | 0.141427 |
Target: 5'- cGCCGG-GCCUcCCCGCGCaggGUGGUGUg -3' miRNA: 3'- -UGGUCuUGGAuGGGCGCG---CGCCGCGg -5' |
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355 | 5' | -61.3 | AC_000011.1 | + | 15750 | 0.71 | 0.149357 |
Target: 5'- cGCCGGuAC--GCCCGCGCcaagagccggcgGCGGCGCa -3' miRNA: 3'- -UGGUCuUGgaUGGGCGCG------------CGCCGCGg -5' |
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355 | 5' | -61.3 | AC_000011.1 | + | 16353 | 0.7 | 0.153472 |
Target: 5'- cACCGGuugcACCUuccGCCCGCGCcacuGCacGCGCCg -3' miRNA: 3'- -UGGUCu---UGGA---UGGGCGCG----CGc-CGCGG- -5' |
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355 | 5' | -61.3 | AC_000011.1 | + | 21383 | 0.7 | 0.153472 |
Target: 5'- uACgAGGGCCUGCUgCGC-CGCaGCGCCc -3' miRNA: 3'- -UGgUCUUGGAUGG-GCGcGCGcCGCGG- -5' |
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355 | 5' | -61.3 | AC_000011.1 | + | 11014 | 0.7 | 0.15769 |
Target: 5'- cGCCGGAGCggcACCCGCGCGUgcagaugaaaagGGaCGCUc -3' miRNA: 3'- -UGGUCUUGga-UGGGCGCGCG------------CC-GCGG- -5' |
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355 | 5' | -61.3 | AC_000011.1 | + | 5210 | 0.7 | 0.162012 |
Target: 5'- gACCGGAcCCUGgCUGCGC-UGGaCGCCc -3' miRNA: 3'- -UGGUCUuGGAUgGGCGCGcGCC-GCGG- -5' |
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355 | 5' | -61.3 | AC_000011.1 | + | 3763 | 0.7 | 0.162012 |
Target: 5'- aGCCGGcGCCcauggccauUCCGCGCaCGGCGCUg -3' miRNA: 3'- -UGGUCuUGGau-------GGGCGCGcGCCGCGG- -5' |
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355 | 5' | -61.3 | AC_000011.1 | + | 16548 | 0.7 | 0.162012 |
Target: 5'- -gCAGGugCUGCcgaCCGCgGCGCcGCGCCg -3' miRNA: 3'- ugGUCUugGAUG---GGCG-CGCGcCGCGG- -5' |
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355 | 5' | -61.3 | AC_000011.1 | + | 11213 | 0.7 | 0.162012 |
Target: 5'- gACgGGGAUCaGCCC-CGCGCGcGCGCa -3' miRNA: 3'- -UGgUCUUGGaUGGGcGCGCGC-CGCGg -5' |
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355 | 5' | -61.3 | AC_000011.1 | + | 15813 | 0.7 | 0.170978 |
Target: 5'- cGCCGGcucuuggcgcgGGCgUACCgGCGCGCGucCGCCa -3' miRNA: 3'- -UGGUC-----------UUGgAUGGgCGCGCGCc-GCGG- -5' |
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355 | 5' | -61.3 | AC_000011.1 | + | 12023 | 0.7 | 0.170978 |
Target: 5'- aGCCAccuCCUGauCCCGCGaugcggGCGGCGCUg -3' miRNA: 3'- -UGGUcuuGGAU--GGGCGCg-----CGCCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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