miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
356 5' -58.1 AC_000011.1 + 8324 0.66 0.384239
Target:  5'- cUCCuGCAAgucaaccgcgcgccGCCGcuGCCCAcuGACCUGa -3'
miRNA:   3'- -AGGuCGUU--------------CGGCc-CGGGUuuCUGGAC- -5'
356 5' -58.1 AC_000011.1 + 17839 0.68 0.310336
Target:  5'- gCCGGCGGGCggcacCGGGUCCAGGcGGCUg- -3'
miRNA:   3'- aGGUCGUUCG-----GCCCGGGUUU-CUGGac -5'
356 5' -58.1 AC_000011.1 + 11423 0.69 0.290456
Target:  5'- cUCCAGCAGGUCccacaggugcaucaGGCCCAGGGucACCUc -3'
miRNA:   3'- -AGGUCGUUCGGc-------------CCGGGUUUC--UGGAc -5'
356 5' -58.1 AC_000011.1 + 26516 0.71 0.182469
Target:  5'- aCCGGC-GGCCaGGCCCAucuGGGgCUGg -3'
miRNA:   3'- aGGUCGuUCGGcCCGGGUu--UCUgGAC- -5'
356 5' -58.1 AC_000011.1 + 13510 0.72 0.16327
Target:  5'- cCCAGCAAGCgCGGGCgCGu-GAuCCUGc -3'
miRNA:   3'- aGGUCGUUCG-GCCCGgGUuuCU-GGAC- -5'
356 5' -58.1 AC_000011.1 + 27275 0.73 0.150083
Target:  5'- cUCC-GUggGCCGGGCCCugAGGGugCUc -3'
miRNA:   3'- -AGGuCGuuCGGCCCGGG--UUUCugGAc -5'
356 5' -58.1 AC_000011.1 + 9773 1.09 0.00024
Target:  5'- aUCCAGCAAGCCGGGCCCAAAGACCUGg -3'
miRNA:   3'- -AGGUCGUUCGGCCCGGGUUUCUGGAC- -5'
356 5' -58.1 AC_000011.1 + 16401 0.68 0.326322
Target:  5'- gCCggAGCGcucGCCGGGCgUGAAGACCa- -3'
miRNA:   3'- aGG--UCGUu--CGGCCCGgGUUUCUGGac -5'
356 5' -58.1 AC_000011.1 + 21225 0.66 0.434635
Target:  5'- cCCAGgAAGuaGGGCCCGcAGcCCa- -3'
miRNA:   3'- aGGUCgUUCggCCCGGGUuUCuGGac -5'
356 5' -58.1 AC_000011.1 + 12228 0.66 0.415165
Target:  5'- cUCCAGgauGGCCGaGaGCCgGuuGGCCUGg -3'
miRNA:   3'- -AGGUCgu-UCGGC-C-CGGgUuuCUGGAC- -5'
356 5' -58.1 AC_000011.1 + 21178 0.66 0.386987
Target:  5'- cUCCuGCucGCCGGaGCCCGc-GGCCa- -3'
miRNA:   3'- -AGGuCGuuCGGCC-CGGGUuuCUGGac -5'
356 5' -58.1 AC_000011.1 + 7566 0.66 0.396239
Target:  5'- cUCgAGC-AGCaCGGGCUCAgcGACCc- -3'
miRNA:   3'- -AGgUCGuUCG-GCCCGGGUuuCUGGac -5'
356 5' -58.1 AC_000011.1 + 11406 0.67 0.342911
Target:  5'- aCCAGCAAGCCGcugacGGCgCAGcuguuCCUGg -3'
miRNA:   3'- aGGUCGUUCGGC-----CCGgGUUucu--GGAC- -5'
356 5' -58.1 AC_000011.1 + 21127 0.71 0.182469
Target:  5'- cUCCGGCGAGCaGGaGCUCAGGgccaucauccgcGACCUGg -3'
miRNA:   3'- -AGGUCGUUCGgCC-CGGGUUU------------CUGGAC- -5'
356 5' -58.1 AC_000011.1 + 9433 0.69 0.28675
Target:  5'- cUCCAGguGGCCGGGgggguCCCcguugggcagggaGAGGGCgCUGa -3'
miRNA:   3'- -AGGUCguUCGGCCC-----GGG-------------UUUCUG-GAC- -5'
356 5' -58.1 AC_000011.1 + 11895 0.69 0.287488
Target:  5'- cCCAGCc-GCCGGGCCUuGGAGGCg-- -3'
miRNA:   3'- aGGUCGuuCGGCCCGGG-UUUCUGgac -5'
356 5' -58.1 AC_000011.1 + 8206 0.68 0.294954
Target:  5'- ---cGCAGGCCGGagcuGUCCAGGGuCCUGa -3'
miRNA:   3'- agguCGUUCGGCC----CGGGUUUCuGGAC- -5'
356 5' -58.1 AC_000011.1 + 12851 0.66 0.405633
Target:  5'- cCCAcGUGAGCCGcGCCCu-GGGCCa- -3'
miRNA:   3'- aGGU-CGUUCGGCcCGGGuuUCUGGac -5'
356 5' -58.1 AC_000011.1 + 11493 0.66 0.396239
Target:  5'- aCCgAGCccgaGGGCCGcuGGCUCcuGGACCUGg -3'
miRNA:   3'- aGG-UCG----UUCGGC--CCGGGuuUCUGGAC- -5'
356 5' -58.1 AC_000011.1 + 8479 0.66 0.386987
Target:  5'- -gCGGCAggggcGGCUcgGGGCCCGGAGGCa-- -3'
miRNA:   3'- agGUCGU-----UCGG--CCCGGGUUUCUGgac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.