Results 21 - 26 of 26 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 356 | 5' | -58.1 | AC_000011.1 | + | 26516 | 0.71 | 0.182469 |
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Target: 5'- aCCGGC-GGCCaGGCCCAucuGGGgCUGg -3' miRNA: 3'- aGGUCGuUCGGcCCGGGUu--UCUgGAC- -5' |
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| 356 | 5' | -58.1 | AC_000011.1 | + | 13510 | 0.72 | 0.16327 |
|
Target: 5'- cCCAGCAAGCgCGGGCgCGu-GAuCCUGc -3' miRNA: 3'- aGGUCGUUCG-GCCCGgGUuuCU-GGAC- -5' |
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| 356 | 5' | -58.1 | AC_000011.1 | + | 27275 | 0.73 | 0.150083 |
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Target: 5'- cUCC-GUggGCCGGGCCCugAGGGugCUc -3' miRNA: 3'- -AGGuCGuuCGGCCCGGG--UUUCugGAc -5' |
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| 356 | 5' | -58.1 | AC_000011.1 | + | 19188 | 0.75 | 0.109646 |
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Target: 5'- gUCAGCAAGCCauGCCCAAcAGACCUa -3' miRNA: 3'- aGGUCGUUCGGccCGGGUU-UCUGGAc -5' |
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| 356 | 5' | -58.1 | AC_000011.1 | + | 21970 | 0.82 | 0.029759 |
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Target: 5'- cCCAGCAGGUCGGGCgCGGAGAUCUu -3' miRNA: 3'- aGGUCGUUCGGCCCGgGUUUCUGGAc -5' |
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| 356 | 5' | -58.1 | AC_000011.1 | + | 9773 | 1.09 | 0.00024 |
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Target: 5'- aUCCAGCAAGCCGGGCCCAAAGACCUGg -3' miRNA: 3'- -AGGUCGUUCGGCCCGGGUUUCUGGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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