miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
357 3' -56.1 AC_000011.1 + 13991 0.66 0.516055
Target:  5'- gGCUgcaucGCCGCCGcCGCCAUcgccugcugcaucacGCUCucguacgagggagGAGGACc -3'
miRNA:   3'- -CGA-----UGGUGGC-GUGGUA---------------CGAG-------------CUCCUG- -5'
357 3' -56.1 AC_000011.1 + 22799 0.66 0.538946
Target:  5'- -gUACCGCCGCAUC-UGCcaccuguacaucaaCGAGGAg -3'
miRNA:   3'- cgAUGGUGGCGUGGuACGa-------------GCUCCUg -5'
357 3' -56.1 AC_000011.1 + 11961 0.66 0.555508
Target:  5'- cCUGCCGCCGCcuccaagGCCcgGCggcuGGGCu -3'
miRNA:   3'- cGAUGGUGGCG-------UGGuaCGagcuCCUG- -5'
357 3' -56.1 AC_000011.1 + 13417 0.68 0.443963
Target:  5'- gGC-ACCGCCGCggcagcacccucgcgGCCGgacagcGC-CGAGGACg -3'
miRNA:   3'- -CGaUGGUGGCG---------------UGGUa-----CGaGCUCCUG- -5'
357 3' -56.1 AC_000011.1 + 22629 0.68 0.430027
Target:  5'- gGCUGCacgGgUGCACCGagGC-CGAGGGCa -3'
miRNA:   3'- -CGAUGg--UgGCGUGGUa-CGaGCUCCUG- -5'
357 3' -56.1 AC_000011.1 + 999 0.68 0.420233
Target:  5'- cCUGCUcguCCuCAUCAUcGCUCGGGGGCa -3'
miRNA:   3'- cGAUGGu--GGcGUGGUA-CGAGCUCCUG- -5'
357 3' -56.1 AC_000011.1 + 6702 0.69 0.382444
Target:  5'- cGCUGCUACCcCACCuacaucgGCauccUCGAGGAg -3'
miRNA:   3'- -CGAUGGUGGcGUGGua-----CG----AGCUCCUg -5'
357 3' -56.1 AC_000011.1 + 24390 0.69 0.382444
Target:  5'- --aGCCACCGgGCCAgcUGCUCGucgcugaccacGGGCu -3'
miRNA:   3'- cgaUGGUGGCgUGGU--ACGAGCu----------CCUG- -5'
357 3' -56.1 AC_000011.1 + 12792 0.71 0.290759
Target:  5'- uGCUGCCGCUGU-CCGUGaa-GGGGGCc -3'
miRNA:   3'- -CGAUGGUGGCGuGGUACgagCUCCUG- -5'
357 3' -56.1 AC_000011.1 + 5719 0.75 0.143019
Target:  5'- --gACCGCgGCACaccGCUCGAGGACc -3'
miRNA:   3'- cgaUGGUGgCGUGguaCGAGCUCCUG- -5'
357 3' -56.1 AC_000011.1 + 33968 0.76 0.123944
Target:  5'- uGCUGcgcCCGCCGCACCAgacgacugaUGCU-GAGGGCc -3'
miRNA:   3'- -CGAU---GGUGGCGUGGU---------ACGAgCUCCUG- -5'
357 3' -56.1 AC_000011.1 + 10265 1.1 0.00037
Target:  5'- gGCUACCACCGCACCAUGCUCGAGGACc -3'
miRNA:   3'- -CGAUGGUGGCGUGGUACGAGCUCCUG- -5'
357 3' -56.1 AC_000011.1 + 24749 0.66 0.556617
Target:  5'- uGCUGCCACaCGC-CCAUGCcCGucugccAGGu- -3'
miRNA:   3'- -CGAUGGUG-GCGuGGUACGaGC------UCCug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.