miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
357 5' -64.5 AC_000011.1 + 6396 0.67 0.182612
Target:  5'- -aGCCCCUGCgCGgCGAG--GUGGCCa -3'
miRNA:   3'- cgCGGGGGCG-GUgGCUCgcUACCGGc -5'
357 5' -64.5 AC_000011.1 + 25109 0.67 0.187419
Target:  5'- aCGUCCUCGaucaCGuCCGAGUGGUaGGCCa -3'
miRNA:   3'- cGCGGGGGCg---GU-GGCUCGCUA-CCGGc -5'
357 5' -64.5 AC_000011.1 + 18139 0.67 0.197368
Target:  5'- gGUGCCCCCGgg-UCGcGCGcgGGCCa -3'
miRNA:   3'- -CGCGGGGGCgguGGCuCGCuaCCGGc -5'
357 5' -64.5 AC_000011.1 + 16338 0.66 0.202513
Target:  5'- cCGCCCgCGCCACUGcacGCGcc-GCCGg -3'
miRNA:   3'- cGCGGGgGCGGUGGCu--CGCuacCGGC- -5'
357 5' -64.5 AC_000011.1 + 12092 0.66 0.207774
Target:  5'- aGCGCCgCCCGCaucgCGGGaucaggaGGUGGCUGu -3'
miRNA:   3'- -CGCGG-GGGCGgug-GCUCg------CUACCGGC- -5'
357 5' -64.5 AC_000011.1 + 33965 0.66 0.213153
Target:  5'- uGCGCCCgCCGCaccagacgACUGAuGCuGAgGGCCGu -3'
miRNA:   3'- -CGCGGG-GGCGg-------UGGCU-CG-CUaCCGGC- -5'
357 5' -64.5 AC_000011.1 + 25949 0.68 0.147948
Target:  5'- uUGCCCCCGCagGCCugcaagcagGAGaCGAUGGCg- -3'
miRNA:   3'- cGCGGGGGCGg-UGG---------CUC-GCUACCGgc -5'
357 5' -64.5 AC_000011.1 + 8462 0.68 0.147555
Target:  5'- uCGCCCCaGCCGCCcaagaagaaacggGGGaCGGUGGUCa -3'
miRNA:   3'- cGCGGGGgCGGUGG-------------CUC-GCUACCGGc -5'
357 5' -64.5 AC_000011.1 + 10229 1.08 0.000094
Target:  5'- gGCGCCCCCGCCACCGAGCGAUGGCCGc -3'
miRNA:   3'- -CGCGGGGGCGGUGGCUCGCUACCGGC- -5'
357 5' -64.5 AC_000011.1 + 15844 0.82 0.01295
Target:  5'- gGUGCUCCggUGCCGCCGGGCGAUGcGCCGc -3'
miRNA:   3'- -CGCGGGG--GCGGUGGCUCGCUAC-CGGC- -5'
357 5' -64.5 AC_000011.1 + 16022 0.74 0.058307
Target:  5'- cGUuCCCUCGCCGCgGgcgggacaugcuGGCGAUGGCCGc -3'
miRNA:   3'- -CGcGGGGGCGGUGgC------------UCGCUACCGGC- -5'
357 5' -64.5 AC_000011.1 + 34741 0.73 0.070873
Target:  5'- aGCGCCgagaCCGCCGCCG-GCGAUcGGUg- -3'
miRNA:   3'- -CGCGGg---GGCGGUGGCuCGCUA-CCGgc -5'
357 5' -64.5 AC_000011.1 + 17303 0.72 0.081404
Target:  5'- cGCGCCgCCGCCGgUG-GUGGUGGCg- -3'
miRNA:   3'- -CGCGGgGGCGGUgGCuCGCUACCGgc -5'
357 5' -64.5 AC_000011.1 + 8561 0.71 0.090888
Target:  5'- cGUGCCCCUGCCGCCccuGCcuccgGGCCc -3'
miRNA:   3'- -CGCGGGGGCGGUGGcu-CGcua--CCGGc -5'
357 5' -64.5 AC_000011.1 + 8527 0.7 0.107101
Target:  5'- cCGCCCCUGCCGCCcGGCGcgcguccucGCCGc -3'
miRNA:   3'- cGCGGGGGCGGUGGcUCGCuac------CGGC- -5'
357 5' -64.5 AC_000011.1 + 15926 0.7 0.116193
Target:  5'- cGCGUCUggCCGCC-CUGAGC-AUGGCCc -3'
miRNA:   3'- -CGCGGG--GGCGGuGGCUCGcUACCGGc -5'
357 5' -64.5 AC_000011.1 + 11191 0.7 0.11938
Target:  5'- cGCaGCUCCCGCC-CCGcGUGGaaccgGGCCGc -3'
miRNA:   3'- -CG-CGGGGGCGGuGGCuCGCUa----CCGGC- -5'
357 5' -64.5 AC_000011.1 + 27004 0.69 0.122648
Target:  5'- aGUGCCgaUGCCAcCCGAGCGG-GGCUGc -3'
miRNA:   3'- -CGCGGggGCGGU-GGCUCGCUaCCGGC- -5'
357 5' -64.5 AC_000011.1 + 23266 0.66 0.235875
Target:  5'- cUGCCCCCGaagagacauacCUACCGccGCG-UGGCCu -3'
miRNA:   3'- cGCGGGGGC-----------GGUGGCu-CGCuACCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.