miRNA display CGI


Results 1 - 20 of 39 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
357 5' -64.5 AC_000011.1 + 18057 0.79 0.02229
Target:  5'- -aGCCCCUGCCGCCGguGGCcGUGGCCc -3'
miRNA:   3'- cgCGGGGGCGGUGGC--UCGcUACCGGc -5'
357 5' -64.5 AC_000011.1 + 13974 0.66 0.235875
Target:  5'- cGUGCCCCCGCggUACCuGGCGccuacggaggGGCgGa -3'
miRNA:   3'- -CGCGGGGGCG--GUGGcUCGCua--------CCGgC- -5'
357 5' -64.5 AC_000011.1 + 24989 0.66 0.224269
Target:  5'- aGUGCCCCCcgccgcuguggaGCCACUGcuaccugcuGCGccUGGCCa -3'
miRNA:   3'- -CGCGGGGG------------CGGUGGCu--------CGCu-ACCGGc -5'
357 5' -64.5 AC_000011.1 + 15757 0.66 0.218651
Target:  5'- aCGCCCgCGCCaagaGCCG-GCGgcGGCg- -3'
miRNA:   3'- cGCGGGgGCGG----UGGCuCGCuaCCGgc -5'
357 5' -64.5 AC_000011.1 + 11477 0.66 0.218651
Target:  5'- gGCGCUgCUGaauauCACCGAGCccGAgGGCCGc -3'
miRNA:   3'- -CGCGGgGGCg----GUGGCUCG--CUaCCGGC- -5'
357 5' -64.5 AC_000011.1 + 13183 0.66 0.218651
Target:  5'- -gGCUCCCGCCGCCGggguucuacacgGGCGA-GuaCGa -3'
miRNA:   3'- cgCGGGGGCGGUGGC------------UCGCUaCcgGC- -5'
357 5' -64.5 AC_000011.1 + 15804 0.66 0.215337
Target:  5'- aGCaCCCCCGCCAUgcgcgCGGcGCGAgccuugcugcgcagGGCCa -3'
miRNA:   3'- -CGcGGGGGCGGUG-----GCU-CGCUa-------------CCGGc -5'
357 5' -64.5 AC_000011.1 + 12511 0.66 0.215337
Target:  5'- aGCGCCCUgCGCCugauggugACCGAggugccccagaGCGAgguguaccaguccgGGCCGg -3'
miRNA:   3'- -CGCGGGG-GCGG--------UGGCU-----------CGCUa-------------CCGGC- -5'
357 5' -64.5 AC_000011.1 + 17863 0.66 0.202513
Target:  5'- aGCGaCCCCGCC-CCGAuGCGGaGGagaCGc -3'
miRNA:   3'- -CGCgGGGGCGGuGGCU-CGCUaCCg--GC- -5'
357 5' -64.5 AC_000011.1 + 8782 0.69 0.129089
Target:  5'- -gGUCUCCGCgGCCGGcGCGcuccacgGUGGCCGc -3'
miRNA:   3'- cgCGGGGGCGgUGGCU-CGC-------UACCGGC- -5'
357 5' -64.5 AC_000011.1 + 23243 0.75 0.047911
Target:  5'- cGgGCUCUCGCCGCCGcgacuuGGCGgAUGGCUGg -3'
miRNA:   3'- -CgCGGGGGCGGUGGC------UCGC-UACCGGC- -5'
357 5' -64.5 AC_000011.1 + 21404 0.74 0.055132
Target:  5'- aGCGCCCUgGCCACCGAG-GAccGCUGc -3'
miRNA:   3'- -CGCGGGGgCGGUGGCUCgCUacCGGC- -5'
357 5' -64.5 AC_000011.1 + 22427 0.71 0.096016
Target:  5'- uGCGCCCCCaGCgGuuCUGGGUGAucuUGGCCc -3'
miRNA:   3'- -CGCGGGGG-CGgU--GGCUCGCU---ACCGGc -5'
357 5' -64.5 AC_000011.1 + 10922 0.7 0.107101
Target:  5'- cCGCCgCgGCCGCCguGAGCGG-GGCUGg -3'
miRNA:   3'- cGCGGgGgCGGUGG--CUCGCUaCCGGC- -5'
357 5' -64.5 AC_000011.1 + 17965 0.7 0.116193
Target:  5'- cGCGCCCCUgGCCACCGGG-Gu--GCUGa -3'
miRNA:   3'- -CGCGGGGG-CGGUGGCUCgCuacCGGC- -5'
357 5' -64.5 AC_000011.1 + 15631 0.7 0.119058
Target:  5'- cGCGCaCCaCCGUCgacgacgugaucgACCaGGUGGUGGCCGa -3'
miRNA:   3'- -CGCG-GG-GGCGG-------------UGGcUCGCUACCGGC- -5'
357 5' -64.5 AC_000011.1 + 23266 0.66 0.235875
Target:  5'- cUGCCCCCGaagagacauacCUACCGccGCG-UGGCCu -3'
miRNA:   3'- cGCGGGGGC-----------GGUGGCu-CGCuACCGGc -5'
357 5' -64.5 AC_000011.1 + 15844 0.82 0.01295
Target:  5'- gGUGCUCCggUGCCGCCGGGCGAUGcGCCGc -3'
miRNA:   3'- -CGCGGGG--GCGGUGGCUCGCUAC-CGGC- -5'
357 5' -64.5 AC_000011.1 + 16022 0.74 0.058307
Target:  5'- cGUuCCCUCGCCGCgGgcgggacaugcuGGCGAUGGCCGc -3'
miRNA:   3'- -CGcGGGGGCGGUGgC------------UCGCUACCGGC- -5'
357 5' -64.5 AC_000011.1 + 34741 0.73 0.070873
Target:  5'- aGCGCCgagaCCGCCGCCG-GCGAUcGGUg- -3'
miRNA:   3'- -CGCGGg---GGCGGUGGCuCGCUA-CCGgc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.