miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3574 5' -56.9 NC_001650.1 + 61686 0.75 0.445089
Target:  5'- aAAGAUGGCCGCCAgcgucgccuucUGGUCCCcaaguccaaagcacuACGUGc -3'
miRNA:   3'- gUUCUACCGGCGGU-----------GUCAGGG---------------UGCAC- -5'
3574 5' -56.9 NC_001650.1 + 65272 0.72 0.584761
Target:  5'- -cAGGUGGCCGUCAUGG-CCCGCa-- -3'
miRNA:   3'- guUCUACCGGCGGUGUCaGGGUGcac -5'
3574 5' -56.9 NC_001650.1 + 67599 0.74 0.487329
Target:  5'- gAAGGUGGCCGaggaCGCcuaccuGUUCCACGUGa -3'
miRNA:   3'- gUUCUACCGGCg---GUGu-----CAGGGUGCAC- -5'
3574 5' -56.9 NC_001650.1 + 70927 0.66 0.899213
Target:  5'- aCAccGUGGCCGCCAUgucagagagcauGGUCaUCACGUa -3'
miRNA:   3'- -GUucUACCGGCGGUG------------UCAG-GGUGCAc -5'
3574 5' -56.9 NC_001650.1 + 72075 0.69 0.781491
Target:  5'- uCAAGGUGGCUgGCCacgaugacaucaACAGgCgCCACGUGg -3'
miRNA:   3'- -GUUCUACCGG-CGG------------UGUCaG-GGUGCAC- -5'
3574 5' -56.9 NC_001650.1 + 72194 0.66 0.892759
Target:  5'- gGAGAcGGCCGCC-CcG-CCCAgGUGc -3'
miRNA:   3'- gUUCUaCCGGCGGuGuCaGGGUgCAC- -5'
3574 5' -56.9 NC_001650.1 + 72853 0.73 0.515871
Target:  5'- -cAGGUGGCCGCCacccuGCAG-CCCAUGa- -3'
miRNA:   3'- guUCUACCGGCGG-----UGUCaGGGUGCac -5'
3574 5' -56.9 NC_001650.1 + 73680 0.71 0.675316
Target:  5'- -cGGggGGCCGUgGCAGgcgaagCCCGCGUu -3'
miRNA:   3'- guUCuaCCGGCGgUGUCa-----GGGUGCAc -5'
3574 5' -56.9 NC_001650.1 + 74539 0.68 0.799444
Target:  5'- gCAGGGaGGCCGCCACcguggcccuagAGUCCaACGg- -3'
miRNA:   3'- -GUUCUaCCGGCGGUG-----------UCAGGgUGCac -5'
3574 5' -56.9 NC_001650.1 + 77129 0.67 0.872082
Target:  5'- -uGGGUGGUCGCgGCGG-CCC-CGUc -3'
miRNA:   3'- guUCUACCGGCGgUGUCaGGGuGCAc -5'
3574 5' -56.9 NC_001650.1 + 78616 0.66 0.905442
Target:  5'- gCGGGc--GCCGCUGCGGcagacuagCCCACGUGg -3'
miRNA:   3'- -GUUCuacCGGCGGUGUCa-------GGGUGCAC- -5'
3574 5' -56.9 NC_001650.1 + 80560 0.7 0.695266
Target:  5'- gGGGAagGGCCGCCugGGcUCCGCGa- -3'
miRNA:   3'- gUUCUa-CCGGCGGugUCaGGGUGCac -5'
3574 5' -56.9 NC_001650.1 + 81169 0.69 0.738336
Target:  5'- gGAGuUGGCCacgugcuucugguggGCCACGuagCCCACGUGg -3'
miRNA:   3'- gUUCuACCGG---------------CGGUGUca-GGGUGCAC- -5'
3574 5' -56.9 NC_001650.1 + 83451 0.67 0.847176
Target:  5'- --uGAUGGUgGCCcagagggaccaccuGCGcguGUCCCACGUGu -3'
miRNA:   3'- guuCUACCGgCGG--------------UGU---CAGGGUGCAC- -5'
3574 5' -56.9 NC_001650.1 + 86836 0.66 0.905442
Target:  5'- aCAGGcgGGUgaaGCUGCAGUCCC-CGa- -3'
miRNA:   3'- -GUUCuaCCGg--CGGUGUCAGGGuGCac -5'
3574 5' -56.9 NC_001650.1 + 97492 0.69 0.753606
Target:  5'- ---cAUGGCCGCCAgAGUagCCCACa-- -3'
miRNA:   3'- guucUACCGGCGGUgUCA--GGGUGcac -5'
3574 5' -56.9 NC_001650.1 + 102408 0.67 0.864766
Target:  5'- gGGGAgcggGGCCGCCAUcuacgaccuGUCCCAgcugcagcCGUGc -3'
miRNA:   3'- gUUCUa---CCGGCGGUGu--------CAGGGU--------GCAC- -5'
3574 5' -56.9 NC_001650.1 + 107227 0.67 0.869909
Target:  5'- gGAGAagcUGGCCGCCGCccucaagauggacgGGU-CCACGg- -3'
miRNA:   3'- gUUCU---ACCGGCGGUG--------------UCAgGGUGCac -5'
3574 5' -56.9 NC_001650.1 + 117241 0.66 0.911443
Target:  5'- gCAGGgcGGCgGCCA-GGUCCC-CGUu -3'
miRNA:   3'- -GUUCuaCCGgCGGUgUCAGGGuGCAc -5'
3574 5' -56.9 NC_001650.1 + 118095 0.66 0.899213
Target:  5'- cCGAGGUGG-UGCaGCAGcCCCACGa- -3'
miRNA:   3'- -GUUCUACCgGCGgUGUCaGGGUGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.