miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3574 5' -56.9 NC_001650.1 + 3447 1.07 0.003744
Target:  5'- cCAAGAUGGCCGCCACAGUCCCACGUGc -3'
miRNA:   3'- -GUUCUACCGGCGGUGUCAGGGUGCAC- -5'
3574 5' -56.9 NC_001650.1 + 3518 0.84 0.124108
Target:  5'- uUAAGAUGGCCGCCGCuccUCaCCACGUGg -3'
miRNA:   3'- -GUUCUACCGGCGGUGuc-AG-GGUGCAC- -5'
3574 5' -56.9 NC_001650.1 + 3587 0.82 0.164031
Target:  5'- cUAAGAUGGCCGCC-CcGcCCCACGUGg -3'
miRNA:   3'- -GUUCUACCGGCGGuGuCaGGGUGCAC- -5'
3574 5' -56.9 NC_001650.1 + 5148 0.7 0.724785
Target:  5'- cUAAGAUGGCCGCCGCucgCCUAa--- -3'
miRNA:   3'- -GUUCUACCGGCGGUGucaGGGUgcac -5'
3574 5' -56.9 NC_001650.1 + 5465 0.67 0.872082
Target:  5'- cCAAGAUGGCCGCCugcCAGg--CAUGg- -3'
miRNA:   3'- -GUUCUACCGGCGGu--GUCaggGUGCac -5'
3574 5' -56.9 NC_001650.1 + 5546 0.79 0.272877
Target:  5'- aCAAGAUGGCCGCCuccccaCCACGUGg -3'
miRNA:   3'- -GUUCUACCGGCGGugucagGGUGCAC- -5'
3574 5' -56.9 NC_001650.1 + 5569 0.71 0.63507
Target:  5'- aCAAGAUGGCCGCCGCGG---CACa-- -3'
miRNA:   3'- -GUUCUACCGGCGGUGUCaggGUGcac -5'
3574 5' -56.9 NC_001650.1 + 10736 0.74 0.459554
Target:  5'- uCAAGAUGGCCGCCAa---CCCACa-- -3'
miRNA:   3'- -GUUCUACCGGCGGUgucaGGGUGcac -5'
3574 5' -56.9 NC_001650.1 + 14860 0.7 0.685313
Target:  5'- aGAGAggccGGCCGCCcgGGUUCCACuGUGa -3'
miRNA:   3'- gUUCUa---CCGGCGGugUCAGGGUG-CAC- -5'
3574 5' -56.9 NC_001650.1 + 16247 0.67 0.849529
Target:  5'- gGAGGUGGCCuGcCCACuGaCCuCAUGUGg -3'
miRNA:   3'- gUUCUACCGG-C-GGUGuCaGG-GUGCAC- -5'
3574 5' -56.9 NC_001650.1 + 17219 0.7 0.692285
Target:  5'- aAAGAUGGCCGCCAgGggguuguggccucuGUCUgACGUu -3'
miRNA:   3'- gUUCUACCGGCGGUgU--------------CAGGgUGCAc -5'
3574 5' -56.9 NC_001650.1 + 24088 0.67 0.872082
Target:  5'- cCGAGAUGGCCaugGCgGggaugaGGUCCCuggACGUGg -3'
miRNA:   3'- -GUUCUACCGG---CGgUg-----UCAGGG---UGCAC- -5'
3574 5' -56.9 NC_001650.1 + 26423 0.69 0.744091
Target:  5'- -----gGGCUGCCGCGGgCCC-CGUGg -3'
miRNA:   3'- guucuaCCGGCGGUGUCaGGGuGCAC- -5'
3574 5' -56.9 NC_001650.1 + 26633 0.66 0.87919
Target:  5'- aCAAGAagcUGGaCCcgGCCACGGUCUCG-GUGa -3'
miRNA:   3'- -GUUCU---ACC-GG--CGGUGUCAGGGUgCAC- -5'
3574 5' -56.9 NC_001650.1 + 31340 0.68 0.816811
Target:  5'- aAAGGUGGCCGa-GCAGUCCUucugcaggGCGg- -3'
miRNA:   3'- gUUCUACCGGCggUGUCAGGG--------UGCac -5'
3574 5' -56.9 NC_001650.1 + 41473 0.7 0.724785
Target:  5'- uCGAGGUGuCgCGCCGCgaGGUCCC-CGUGg -3'
miRNA:   3'- -GUUCUACcG-GCGGUG--UCAGGGuGCAC- -5'
3574 5' -56.9 NC_001650.1 + 41950 0.68 0.808205
Target:  5'- ---aAUGGCCGCCGgAGaCCuCugGUGg -3'
miRNA:   3'- guucUACCGGCGGUgUCaGG-GugCAC- -5'
3574 5' -56.9 NC_001650.1 + 46603 0.73 0.533317
Target:  5'- gGAGggGGCCGCCGCGGcgcaucuggugcCCCGCGg- -3'
miRNA:   3'- gUUCuaCCGGCGGUGUCa-----------GGGUGCac -5'
3574 5' -56.9 NC_001650.1 + 51217 0.73 0.525537
Target:  5'- aGAGggGGCCGCCGCg--CCCGCGc- -3'
miRNA:   3'- gUUCuaCCGGCGGUGucaGGGUGCac -5'
3574 5' -56.9 NC_001650.1 + 56222 0.68 0.799444
Target:  5'- -uGGGUGGCCGCgaACgAGUCCC-CGg- -3'
miRNA:   3'- guUCUACCGGCGg-UG-UCAGGGuGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.