miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3574 5' -56.9 NC_001650.1 + 183926 0.7 0.692285
Target:  5'- aAAGAUGGCCGCCAgGggguuguggccucuGUCUgACGUu -3'
miRNA:   3'- gUUCUACCGGCGGUgU--------------CAGGgUGCAc -5'
3574 5' -56.9 NC_001650.1 + 182954 0.67 0.849529
Target:  5'- gGAGGUGGCCuGcCCACuGaCCuCAUGUGg -3'
miRNA:   3'- gUUCUACCGG-C-GGUGuCaGG-GUGCAC- -5'
3574 5' -56.9 NC_001650.1 + 181567 0.7 0.685313
Target:  5'- aGAGAggccGGCCGCCcgGGUUCCACuGUGa -3'
miRNA:   3'- gUUCUa---CCGGCGGugUCAGGGUG-CAC- -5'
3574 5' -56.9 NC_001650.1 + 177443 0.74 0.459554
Target:  5'- uCAAGAUGGCCGCCAa---CCCACa-- -3'
miRNA:   3'- -GUUCUACCGGCGGUgucaGGGUGcac -5'
3574 5' -56.9 NC_001650.1 + 172276 0.71 0.63507
Target:  5'- aCAAGAUGGCCGCCGCGG---CACa-- -3'
miRNA:   3'- -GUUCUACCGGCGGUGUCaggGUGcac -5'
3574 5' -56.9 NC_001650.1 + 172253 0.79 0.272877
Target:  5'- aCAAGAUGGCCGCCuccccaCCACGUGg -3'
miRNA:   3'- -GUUCUACCGGCGGugucagGGUGCAC- -5'
3574 5' -56.9 NC_001650.1 + 172172 0.67 0.872082
Target:  5'- cCAAGAUGGCCGCCugcCAGg--CAUGg- -3'
miRNA:   3'- -GUUCUACCGGCGGu--GUCaggGUGCac -5'
3574 5' -56.9 NC_001650.1 + 171855 0.7 0.724785
Target:  5'- cUAAGAUGGCCGCCGCucgCCUAa--- -3'
miRNA:   3'- -GUUCUACCGGCGGUGucaGGGUgcac -5'
3574 5' -56.9 NC_001650.1 + 170294 0.82 0.164031
Target:  5'- cUAAGAUGGCCGCC-CcGcCCCACGUGg -3'
miRNA:   3'- -GUUCUACCGGCGGuGuCaGGGUGCAC- -5'
3574 5' -56.9 NC_001650.1 + 170225 0.84 0.124108
Target:  5'- uUAAGAUGGCCGCCGCuccUCaCCACGUGg -3'
miRNA:   3'- -GUUCUACCGGCGGUGuc-AG-GGUGCAC- -5'
3574 5' -56.9 NC_001650.1 + 170154 1.07 0.003744
Target:  5'- cCAAGAUGGCCGCCACAGUCCCACGUGc -3'
miRNA:   3'- -GUUCUACCGGCGGUGUCAGGGUGCAC- -5'
3574 5' -56.9 NC_001650.1 + 164880 0.72 0.584761
Target:  5'- uCGGGggGGUugagCGCCGCGGUCCCACc-- -3'
miRNA:   3'- -GUUCuaCCG----GCGGUGUCAGGGUGcac -5'
3574 5' -56.9 NC_001650.1 + 156408 0.66 0.87919
Target:  5'- gGAGAUGGCCcugGCCggGCAGUgCgGgGUGa -3'
miRNA:   3'- gUUCUACCGG---CGG--UGUCAgGgUgCAC- -5'
3574 5' -56.9 NC_001650.1 + 155051 0.66 0.892759
Target:  5'- cCGAGG-GGUCGCagaGCAGgCCCAgGUGc -3'
miRNA:   3'- -GUUCUaCCGGCGg--UGUCaGGGUgCAC- -5'
3574 5' -56.9 NC_001650.1 + 142877 0.71 0.665286
Target:  5'- aCAGGGaaaUGGCCGCCGCcGcCCCGgccCGUGc -3'
miRNA:   3'- -GUUCU---ACCGGCGGUGuCaGGGU---GCAC- -5'
3574 5' -56.9 NC_001650.1 + 137048 0.67 0.872082
Target:  5'- -----aGGCC-CUGCAGUUCCugGUGg -3'
miRNA:   3'- guucuaCCGGcGGUGUCAGGGugCAC- -5'
3574 5' -56.9 NC_001650.1 + 134367 0.66 0.899213
Target:  5'- gGGGAgGGCCGcCCGCGGUcgcccCCUugGUc -3'
miRNA:   3'- gUUCUaCCGGC-GGUGUCA-----GGGugCAc -5'
3574 5' -56.9 NC_001650.1 + 134104 0.71 0.675316
Target:  5'- ----cUGGgCGCCGCGGUCCCAgGg- -3'
miRNA:   3'- guucuACCgGCGGUGUCAGGGUgCac -5'
3574 5' -56.9 NC_001650.1 + 133953 0.71 0.655229
Target:  5'- -----aGGCgGCCGCAGUgCCCGCGg- -3'
miRNA:   3'- guucuaCCGgCGGUGUCA-GGGUGCac -5'
3574 5' -56.9 NC_001650.1 + 129078 0.67 0.849529
Target:  5'- cCAGGcuggacGUGGCCGCgACGGgcucgcUCCCGCGc- -3'
miRNA:   3'- -GUUC------UACCGGCGgUGUC------AGGGUGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.