miRNA display CGI


Results 1 - 20 of 65 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3574 5' -56.9 NC_001650.1 + 170154 1.07 0.003744
Target:  5'- cCAAGAUGGCCGCCACAGUCCCACGUGc -3'
miRNA:   3'- -GUUCUACCGGCGGUGUCAGGGUGCAC- -5'
3574 5' -56.9 NC_001650.1 + 3447 1.07 0.003744
Target:  5'- cCAAGAUGGCCGCCACAGUCCCACGUGc -3'
miRNA:   3'- -GUUCUACCGGCGGUGUCAGGGUGCAC- -5'
3574 5' -56.9 NC_001650.1 + 170225 0.84 0.124108
Target:  5'- uUAAGAUGGCCGCCGCuccUCaCCACGUGg -3'
miRNA:   3'- -GUUCUACCGGCGGUGuc-AG-GGUGCAC- -5'
3574 5' -56.9 NC_001650.1 + 3518 0.84 0.124108
Target:  5'- uUAAGAUGGCCGCCGCuccUCaCCACGUGg -3'
miRNA:   3'- -GUUCUACCGGCGGUGuc-AG-GGUGCAC- -5'
3574 5' -56.9 NC_001650.1 + 3587 0.82 0.164031
Target:  5'- cUAAGAUGGCCGCC-CcGcCCCACGUGg -3'
miRNA:   3'- -GUUCUACCGGCGGuGuCaGGGUGCAC- -5'
3574 5' -56.9 NC_001650.1 + 170294 0.82 0.164031
Target:  5'- cUAAGAUGGCCGCC-CcGcCCCACGUGg -3'
miRNA:   3'- -GUUCUACCGGCGGuGuCaGGGUGCAC- -5'
3574 5' -56.9 NC_001650.1 + 5546 0.79 0.272877
Target:  5'- aCAAGAUGGCCGCCuccccaCCACGUGg -3'
miRNA:   3'- -GUUCUACCGGCGGugucagGGUGCAC- -5'
3574 5' -56.9 NC_001650.1 + 172253 0.79 0.272877
Target:  5'- aCAAGAUGGCCGCCuccccaCCACGUGg -3'
miRNA:   3'- -GUUCUACCGGCGGugucagGGUGCAC- -5'
3574 5' -56.9 NC_001650.1 + 61686 0.75 0.445089
Target:  5'- aAAGAUGGCCGCCAgcgucgccuucUGGUCCCcaaguccaaagcacuACGUGc -3'
miRNA:   3'- gUUCUACCGGCGGU-----------GUCAGGG---------------UGCAC- -5'
3574 5' -56.9 NC_001650.1 + 10736 0.74 0.459554
Target:  5'- uCAAGAUGGCCGCCAa---CCCACa-- -3'
miRNA:   3'- -GUUCUACCGGCGGUgucaGGGUGcac -5'
3574 5' -56.9 NC_001650.1 + 177443 0.74 0.459554
Target:  5'- uCAAGAUGGCCGCCAa---CCCACa-- -3'
miRNA:   3'- -GUUCUACCGGCGGUgucaGGGUGcac -5'
3574 5' -56.9 NC_001650.1 + 67599 0.74 0.487329
Target:  5'- gAAGGUGGCCGaggaCGCcuaccuGUUCCACGUGa -3'
miRNA:   3'- gUUCUACCGGCg---GUGu-----CAGGGUGCAC- -5'
3574 5' -56.9 NC_001650.1 + 72853 0.73 0.515871
Target:  5'- -cAGGUGGCCGCCacccuGCAG-CCCAUGa- -3'
miRNA:   3'- guUCUACCGGCGG-----UGUCaGGGUGCac -5'
3574 5' -56.9 NC_001650.1 + 51217 0.73 0.525537
Target:  5'- aGAGggGGCCGCCGCg--CCCGCGc- -3'
miRNA:   3'- gUUCuaCCGGCGGUGucaGGGUGCac -5'
3574 5' -56.9 NC_001650.1 + 46603 0.73 0.533317
Target:  5'- gGAGggGGCCGCCGCGGcgcaucuggugcCCCGCGg- -3'
miRNA:   3'- gUUCuaCCGGCGGUGUCa-----------GGGUGCac -5'
3574 5' -56.9 NC_001650.1 + 164880 0.72 0.584761
Target:  5'- uCGGGggGGUugagCGCCGCGGUCCCACc-- -3'
miRNA:   3'- -GUUCuaCCG----GCGGUGUCAGGGUGcac -5'
3574 5' -56.9 NC_001650.1 + 65272 0.72 0.584761
Target:  5'- -cAGGUGGCCGUCAUGG-CCCGCa-- -3'
miRNA:   3'- guUCUACCGGCGGUGUCaGGGUGcac -5'
3574 5' -56.9 NC_001650.1 + 5569 0.71 0.63507
Target:  5'- aCAAGAUGGCCGCCGCGG---CACa-- -3'
miRNA:   3'- -GUUCUACCGGCGGUGUCaggGUGcac -5'
3574 5' -56.9 NC_001650.1 + 172276 0.71 0.63507
Target:  5'- aCAAGAUGGCCGCCGCGG---CACa-- -3'
miRNA:   3'- -GUUCUACCGGCGGUGUCaggGUGcac -5'
3574 5' -56.9 NC_001650.1 + 133953 0.71 0.655229
Target:  5'- -----aGGCgGCCGCAGUgCCCGCGg- -3'
miRNA:   3'- guucuaCCGgCGGUGUCA-GGGUGCac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.