miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3574 5' -56.9 NC_001650.1 + 77129 0.67 0.872082
Target:  5'- -uGGGUGGUCGCgGCGG-CCC-CGUc -3'
miRNA:   3'- guUCUACCGGCGgUGUCaGGGuGCAc -5'
3574 5' -56.9 NC_001650.1 + 72075 0.69 0.781491
Target:  5'- uCAAGGUGGCUgGCCacgaugacaucaACAGgCgCCACGUGg -3'
miRNA:   3'- -GUUCUACCGG-CGG------------UGUCaG-GGUGCAC- -5'
3574 5' -56.9 NC_001650.1 + 56222 0.68 0.799444
Target:  5'- -uGGGUGGCCGCgaACgAGUCCC-CGg- -3'
miRNA:   3'- guUCUACCGGCGg-UG-UCAGGGuGCac -5'
3574 5' -56.9 NC_001650.1 + 74539 0.68 0.799444
Target:  5'- gCAGGGaGGCCGCCACcguggcccuagAGUCCaACGg- -3'
miRNA:   3'- -GUUCUaCCGGCGGUG-----------UCAGGgUGCac -5'
3574 5' -56.9 NC_001650.1 + 83451 0.67 0.847176
Target:  5'- --uGAUGGUgGCCcagagggaccaccuGCGcguGUCCCACGUGu -3'
miRNA:   3'- guuCUACCGgCGG--------------UGU---CAGGGUGCAC- -5'
3574 5' -56.9 NC_001650.1 + 16247 0.67 0.849529
Target:  5'- gGAGGUGGCCuGcCCACuGaCCuCAUGUGg -3'
miRNA:   3'- gUUCUACCGG-C-GGUGuCaGG-GUGCAC- -5'
3574 5' -56.9 NC_001650.1 + 129078 0.67 0.849529
Target:  5'- cCAGGcuggacGUGGCCGCgACGGgcucgcUCCCGCGc- -3'
miRNA:   3'- -GUUC------UACCGGCGgUGUC------AGGGUGCac -5'
3574 5' -56.9 NC_001650.1 + 182954 0.67 0.849529
Target:  5'- gGAGGUGGCCuGcCCACuGaCCuCAUGUGg -3'
miRNA:   3'- gUUCUACCGG-C-GGUGuCaGG-GUGCAC- -5'
3574 5' -56.9 NC_001650.1 + 102408 0.67 0.864766
Target:  5'- gGGGAgcggGGCCGCCAUcuacgaccuGUCCCAgcugcagcCGUGc -3'
miRNA:   3'- gUUCUa---CCGGCGGUGu--------CAGGGU--------GCAC- -5'
3574 5' -56.9 NC_001650.1 + 97492 0.69 0.753606
Target:  5'- ---cAUGGCCGCCAgAGUagCCCACa-- -3'
miRNA:   3'- guucUACCGGCGGUgUCA--GGGUGcac -5'
3574 5' -56.9 NC_001650.1 + 26423 0.69 0.744091
Target:  5'- -----gGGCUGCCGCGGgCCC-CGUGg -3'
miRNA:   3'- guucuaCCGGCGGUGUCaGGGuGCAC- -5'
3574 5' -56.9 NC_001650.1 + 81169 0.69 0.738336
Target:  5'- gGAGuUGGCCacgugcuucugguggGCCACGuagCCCACGUGg -3'
miRNA:   3'- gUUCuACCGG---------------CGGUGUca-GGGUGCAC- -5'
3574 5' -56.9 NC_001650.1 + 177443 0.74 0.459554
Target:  5'- uCAAGAUGGCCGCCAa---CCCACa-- -3'
miRNA:   3'- -GUUCUACCGGCGGUgucaGGGUGcac -5'
3574 5' -56.9 NC_001650.1 + 72853 0.73 0.515871
Target:  5'- -cAGGUGGCCGCCacccuGCAG-CCCAUGa- -3'
miRNA:   3'- guUCUACCGGCGG-----UGUCaGGGUGCac -5'
3574 5' -56.9 NC_001650.1 + 133953 0.71 0.655229
Target:  5'- -----aGGCgGCCGCAGUgCCCGCGg- -3'
miRNA:   3'- guucuaCCGgCGGUGUCA-GGGUGCac -5'
3574 5' -56.9 NC_001650.1 + 142877 0.71 0.665286
Target:  5'- aCAGGGaaaUGGCCGCCGCcGcCCCGgccCGUGc -3'
miRNA:   3'- -GUUCU---ACCGGCGGUGuCaGGGU---GCAC- -5'
3574 5' -56.9 NC_001650.1 + 17219 0.7 0.692285
Target:  5'- aAAGAUGGCCGCCAgGggguuguggccucuGUCUgACGUu -3'
miRNA:   3'- gUUCUACCGGCGGUgU--------------CAGGgUGCAc -5'
3574 5' -56.9 NC_001650.1 + 183926 0.7 0.692285
Target:  5'- aAAGAUGGCCGCCAgGggguuguggccucuGUCUgACGUu -3'
miRNA:   3'- gUUCUACCGGCGGUgU--------------CAGGgUGCAc -5'
3574 5' -56.9 NC_001650.1 + 5148 0.7 0.724785
Target:  5'- cUAAGAUGGCCGCCGCucgCCUAa--- -3'
miRNA:   3'- -GUUCUACCGGCGGUGucaGGGUgcac -5'
3574 5' -56.9 NC_001650.1 + 171855 0.7 0.724785
Target:  5'- cUAAGAUGGCCGCCGCucgCCUAa--- -3'
miRNA:   3'- -GUUCUACCGGCGGUGucaGGGUgcac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.