Results 1 - 20 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3574 | 5' | -56.9 | NC_001650.1 | + | 170154 | 1.07 | 0.003744 |
Target: 5'- cCAAGAUGGCCGCCACAGUCCCACGUGc -3' miRNA: 3'- -GUUCUACCGGCGGUGUCAGGGUGCAC- -5' |
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3574 | 5' | -56.9 | NC_001650.1 | + | 73680 | 0.71 | 0.675316 |
Target: 5'- -cGGggGGCCGUgGCAGgcgaagCCCGCGUu -3' miRNA: 3'- guUCuaCCGGCGgUGUCa-----GGGUGCAc -5' |
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3574 | 5' | -56.9 | NC_001650.1 | + | 14860 | 0.7 | 0.685313 |
Target: 5'- aGAGAggccGGCCGCCcgGGUUCCACuGUGa -3' miRNA: 3'- gUUCUa---CCGGCGGugUCAGGGUG-CAC- -5' |
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3574 | 5' | -56.9 | NC_001650.1 | + | 117241 | 0.66 | 0.911443 |
Target: 5'- gCAGGgcGGCgGCCA-GGUCCC-CGUu -3' miRNA: 3'- -GUUCuaCCGgCGGUgUCAGGGuGCAc -5' |
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3574 | 5' | -56.9 | NC_001650.1 | + | 170294 | 0.82 | 0.164031 |
Target: 5'- cUAAGAUGGCCGCC-CcGcCCCACGUGg -3' miRNA: 3'- -GUUCUACCGGCGGuGuCaGGGUGCAC- -5' |
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3574 | 5' | -56.9 | NC_001650.1 | + | 3587 | 0.82 | 0.164031 |
Target: 5'- cUAAGAUGGCCGCC-CcGcCCCACGUGg -3' miRNA: 3'- -GUUCUACCGGCGGuGuCaGGGUGCAC- -5' |
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3574 | 5' | -56.9 | NC_001650.1 | + | 5546 | 0.79 | 0.272877 |
Target: 5'- aCAAGAUGGCCGCCuccccaCCACGUGg -3' miRNA: 3'- -GUUCUACCGGCGGugucagGGUGCAC- -5' |
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3574 | 5' | -56.9 | NC_001650.1 | + | 61686 | 0.75 | 0.445089 |
Target: 5'- aAAGAUGGCCGCCAgcgucgccuucUGGUCCCcaaguccaaagcacuACGUGc -3' miRNA: 3'- gUUCUACCGGCGGU-----------GUCAGGG---------------UGCAC- -5' |
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3574 | 5' | -56.9 | NC_001650.1 | + | 46603 | 0.73 | 0.533317 |
Target: 5'- gGAGggGGCCGCCGCGGcgcaucuggugcCCCGCGg- -3' miRNA: 3'- gUUCuaCCGGCGGUGUCa-----------GGGUGCac -5' |
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3574 | 5' | -56.9 | NC_001650.1 | + | 134104 | 0.71 | 0.675316 |
Target: 5'- ----cUGGgCGCCGCGGUCCCAgGg- -3' miRNA: 3'- guucuACCgGCGGUGUCAGGGUgCac -5' |
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3574 | 5' | -56.9 | NC_001650.1 | + | 65272 | 0.72 | 0.584761 |
Target: 5'- -cAGGUGGCCGUCAUGG-CCCGCa-- -3' miRNA: 3'- guUCUACCGGCGGUGUCaGGGUGcac -5' |
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3574 | 5' | -56.9 | NC_001650.1 | + | 51217 | 0.73 | 0.525537 |
Target: 5'- aGAGggGGCCGCCGCg--CCCGCGc- -3' miRNA: 3'- gUUCuaCCGGCGGUGucaGGGUGCac -5' |
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3574 | 5' | -56.9 | NC_001650.1 | + | 3447 | 1.07 | 0.003744 |
Target: 5'- cCAAGAUGGCCGCCACAGUCCCACGUGc -3' miRNA: 3'- -GUUCUACCGGCGGUGUCAGGGUGCAC- -5' |
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3574 | 5' | -56.9 | NC_001650.1 | + | 172276 | 0.71 | 0.63507 |
Target: 5'- aCAAGAUGGCCGCCGCGG---CACa-- -3' miRNA: 3'- -GUUCUACCGGCGGUGUCaggGUGcac -5' |
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3574 | 5' | -56.9 | NC_001650.1 | + | 170225 | 0.84 | 0.124108 |
Target: 5'- uUAAGAUGGCCGCCGCuccUCaCCACGUGg -3' miRNA: 3'- -GUUCUACCGGCGGUGuc-AG-GGUGCAC- -5' |
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3574 | 5' | -56.9 | NC_001650.1 | + | 67599 | 0.74 | 0.487329 |
Target: 5'- gAAGGUGGCCGaggaCGCcuaccuGUUCCACGUGa -3' miRNA: 3'- gUUCUACCGGCg---GUGu-----CAGGGUGCAC- -5' |
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3574 | 5' | -56.9 | NC_001650.1 | + | 5569 | 0.71 | 0.63507 |
Target: 5'- aCAAGAUGGCCGCCGCGG---CACa-- -3' miRNA: 3'- -GUUCUACCGGCGGUGUCaggGUGcac -5' |
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3574 | 5' | -56.9 | NC_001650.1 | + | 181567 | 0.7 | 0.685313 |
Target: 5'- aGAGAggccGGCCGCCcgGGUUCCACuGUGa -3' miRNA: 3'- gUUCUa---CCGGCGGugUCAGGGUG-CAC- -5' |
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3574 | 5' | -56.9 | NC_001650.1 | + | 3518 | 0.84 | 0.124108 |
Target: 5'- uUAAGAUGGCCGCCGCuccUCaCCACGUGg -3' miRNA: 3'- -GUUCUACCGGCGGUGuc-AG-GGUGCAC- -5' |
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3574 | 5' | -56.9 | NC_001650.1 | + | 172253 | 0.79 | 0.272877 |
Target: 5'- aCAAGAUGGCCGCCuccccaCCACGUGg -3' miRNA: 3'- -GUUCUACCGGCGGugucagGGUGCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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