miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3575 3' -46.9 NC_001650.1 + 83546 0.67 0.99978
Target:  5'- gGGGCGCCccguuucaggcuGgCCCUGGgcaAGGGGGAGu -3'
miRNA:   3'- -CCCGCGG------------UgGGGAUCauaUUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 143786 0.67 0.99978
Target:  5'- aGGC-CCACaCCCUGGUGUccAAcgGGg -3'
miRNA:   3'- cCCGcGGUG-GGGAUCAUAuuUUuuUC- -5'
3575 3' -46.9 NC_001650.1 + 61021 0.67 0.999775
Target:  5'- aGGGCaGCCACUgggacugCCUcGUGUAGAGGcccGAGa -3'
miRNA:   3'- -CCCG-CGGUGG-------GGAuCAUAUUUUU---UUC- -5'
3575 3' -46.9 NC_001650.1 + 94679 0.68 0.999719
Target:  5'- aGGaGCGCCGCCUC-GGUcUGGucGAGGg -3'
miRNA:   3'- -CC-CGCGGUGGGGaUCAuAUUuuUUUC- -5'
3575 3' -46.9 NC_001650.1 + 102782 0.68 0.999719
Target:  5'- cGGCGCCGgccuCCCCUcccAGcAUGAGGAAc- -3'
miRNA:   3'- cCCGCGGU----GGGGA---UCaUAUUUUUUuc -5'
3575 3' -46.9 NC_001650.1 + 131185 0.68 0.999553
Target:  5'- gGGGCGCCGCCUCgaagacGGgccucuGGGAGu -3'
miRNA:   3'- -CCCGCGGUGGGGa-----UCauauuuUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 17387 0.68 0.999553
Target:  5'- uGGGCGaCCACCUCgggGGUGg-------- -3'
miRNA:   3'- -CCCGC-GGUGGGGa--UCAUauuuuuuuc -5'
3575 3' -46.9 NC_001650.1 + 184094 0.68 0.999553
Target:  5'- uGGGCGaCCACCUCgggGGUGg-------- -3'
miRNA:   3'- -CCCGC-GGUGGGGa--UCAUauuuuuuuc -5'
3575 3' -46.9 NC_001650.1 + 155649 0.68 0.999441
Target:  5'- cGGUGCCGCCgCCggagGGggcgGGGAGGGGg -3'
miRNA:   3'- cCCGCGGUGG-GGa---UCaua-UUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 133100 0.68 0.999441
Target:  5'- cGGGCGCCACCgCCUc------------ -3'
miRNA:   3'- -CCCGCGGUGG-GGAucauauuuuuuuc -5'
3575 3' -46.9 NC_001650.1 + 18090 0.68 0.999306
Target:  5'- uGGGgGCUcuaACCUCUGaUAUGGGGGAAGa -3'
miRNA:   3'- -CCCgCGG---UGGGGAUcAUAUUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 29953 0.69 0.999143
Target:  5'- gGGGCGCgGCCgCCUGGg---------- -3'
miRNA:   3'- -CCCGCGgUGG-GGAUCauauuuuuuuc -5'
3575 3' -46.9 NC_001650.1 + 116286 0.69 0.999088
Target:  5'- aGGGCgGCCGCgcugcuguuuaacaCCCUGGUGccggacgAGGAGAAGc -3'
miRNA:   3'- -CCCG-CGGUG--------------GGGAUCAUa------UUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 57029 0.69 0.998949
Target:  5'- cGGCGUCACCCuCUGc---GAGGAAAGg -3'
miRNA:   3'- cCCGCGGUGGG-GAUcauaUUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 157948 0.69 0.998949
Target:  5'- -cGCGCC-CCCCUAuGUGUAcAGGAGc -3'
miRNA:   3'- ccCGCGGuGGGGAU-CAUAUuUUUUUc -5'
3575 3' -46.9 NC_001650.1 + 88341 0.69 0.998718
Target:  5'- aGGGCuucgguuugGCCGCUCggGGUAUAAGAAAc- -3'
miRNA:   3'- -CCCG---------CGGUGGGgaUCAUAUUUUUUuc -5'
3575 3' -46.9 NC_001650.1 + 79101 0.69 0.998718
Target:  5'- cGGGCGCgGCCgCUcggcGGgcgGGAGGAGGg -3'
miRNA:   3'- -CCCGCGgUGGgGA----UCauaUUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 67627 0.69 0.998718
Target:  5'- cGGGUGCCAagUUCCUaaacGGUAUGGuGAAGGu -3'
miRNA:   3'- -CCCGCGGU--GGGGA----UCAUAUUuUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 158794 0.69 0.998446
Target:  5'- cGGCGUCGCUCCUGccccUGAGGAGGGu -3'
miRNA:   3'- cCCGCGGUGGGGAUcau-AUUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 32423 0.69 0.998446
Target:  5'- -uGCGCCAcCCCCUGGc---AGAGAAGc -3'
miRNA:   3'- ccCGCGGU-GGGGAUCauauUUUUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.