miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3575 3' -46.9 NC_001650.1 + 64852 0.66 0.999942
Target:  5'- -aGCGCC-CCCCUgcggaGGUAUAGugGAAc -3'
miRNA:   3'- ccCGCGGuGGGGA-----UCAUAUUuuUUUc -5'
3575 3' -46.9 NC_001650.1 + 165364 0.66 0.999942
Target:  5'- cGGCGa-GCCCCUAcGUGUGAGc---- -3'
miRNA:   3'- cCCGCggUGGGGAU-CAUAUUUuuuuc -5'
3575 3' -46.9 NC_001650.1 + 124346 0.66 0.999923
Target:  5'- cGGGCGCgACCCCcg----AAAGAAc- -3'
miRNA:   3'- -CCCGCGgUGGGGaucauaUUUUUUuc -5'
3575 3' -46.9 NC_001650.1 + 79412 0.66 0.999923
Target:  5'- cGGGCGgCGCCCCgUGGg---------- -3'
miRNA:   3'- -CCCGCgGUGGGG-AUCauauuuuuuuc -5'
3575 3' -46.9 NC_001650.1 + 90184 0.66 0.999923
Target:  5'- cGGCGCUggcgcCCCCUGGcggcgGUGGGGAAGc -3'
miRNA:   3'- cCCGCGGu----GGGGAUCa----UAUUUUUUUc -5'
3575 3' -46.9 NC_001650.1 + 124694 0.67 0.999899
Target:  5'- gGGGUGCaaGCCUC-GGUGUAGAAAGu- -3'
miRNA:   3'- -CCCGCGg-UGGGGaUCAUAUUUUUUuc -5'
3575 3' -46.9 NC_001650.1 + 59960 0.67 0.999899
Target:  5'- gGGGCGCCucGCCCCcGGg---------- -3'
miRNA:   3'- -CCCGCGG--UGGGGaUCauauuuuuuuc -5'
3575 3' -46.9 NC_001650.1 + 28769 0.67 0.999899
Target:  5'- gGGGCGCCAUcaugagcgCCCUGG-AUAu------ -3'
miRNA:   3'- -CCCGCGGUG--------GGGAUCaUAUuuuuuuc -5'
3575 3' -46.9 NC_001650.1 + 31988 0.67 0.999868
Target:  5'- cGGaGuCCGCCUCUGGUGagcUAGGGGAGGg -3'
miRNA:   3'- cCCgC-GGUGGGGAUCAU---AUUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 124573 0.67 0.999868
Target:  5'- uGGGCGCgACCCCcGGcgAUAc------ -3'
miRNA:   3'- -CCCGCGgUGGGGaUCa-UAUuuuuuuc -5'
3575 3' -46.9 NC_001650.1 + 70679 0.67 0.999868
Target:  5'- aGGGCGuCCACCCCa------------- -3'
miRNA:   3'- -CCCGC-GGUGGGGaucauauuuuuuuc -5'
3575 3' -46.9 NC_001650.1 + 62805 0.67 0.999829
Target:  5'- cGGGCuGCUGCCuCCUgAGUAUGGGc---- -3'
miRNA:   3'- -CCCG-CGGUGG-GGA-UCAUAUUUuuuuc -5'
3575 3' -46.9 NC_001650.1 + 79198 0.67 0.999829
Target:  5'- cGGGCGCUggaggACCCggGGgcUGuuAGAGGg -3'
miRNA:   3'- -CCCGCGG-----UGGGgaUCauAUuuUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 62898 0.67 0.999829
Target:  5'- gGGGCGCgACCCCcagAGaUGUGu------ -3'
miRNA:   3'- -CCCGCGgUGGGGa--UC-AUAUuuuuuuc -5'
3575 3' -46.9 NC_001650.1 + 123915 0.67 0.99982
Target:  5'- gGGGCGuCCACCCCcAGcagccc-AAAGa -3'
miRNA:   3'- -CCCGC-GGUGGGGaUCauauuuuUUUC- -5'
3575 3' -46.9 NC_001650.1 + 94612 0.67 0.99978
Target:  5'- uGGGCGCCGCCUCa------------- -3'
miRNA:   3'- -CCCGCGGUGGGGaucauauuuuuuuc -5'
3575 3' -46.9 NC_001650.1 + 121404 0.67 0.99978
Target:  5'- gGGGCGCCGCCUCg------------- -3'
miRNA:   3'- -CCCGCGGUGGGGaucauauuuuuuuc -5'
3575 3' -46.9 NC_001650.1 + 158453 0.67 0.99978
Target:  5'- cGGcCGCCAgcCCCCUGGUGa-------- -3'
miRNA:   3'- cCC-GCGGU--GGGGAUCAUauuuuuuuc -5'
3575 3' -46.9 NC_001650.1 + 37366 0.67 0.99978
Target:  5'- -uGCGCCugCCCUGGaagGUGAc----- -3'
miRNA:   3'- ccCGCGGugGGGAUCa--UAUUuuuuuc -5'
3575 3' -46.9 NC_001650.1 + 143786 0.67 0.99978
Target:  5'- aGGC-CCACaCCCUGGUGUccAAcgGGg -3'
miRNA:   3'- cCCGcGGUG-GGGAUCAUAuuUUuuUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.