miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3575 3' -46.9 NC_001650.1 + 168349 0.7 0.996243
Target:  5'- gGGGgGCCGgCCUugUGGUGUGAGGuAAGc -3'
miRNA:   3'- -CCCgCGGUgGGG--AUCAUAUUUUuUUC- -5'
3575 3' -46.9 NC_001650.1 + 1642 0.7 0.996243
Target:  5'- gGGGgGCCGgCCUugUGGUGUGAGGuAAGc -3'
miRNA:   3'- -CCCgCGGUgGGG--AUCAUAUUUUuUUC- -5'
3575 3' -46.9 NC_001650.1 + 178600 0.7 0.996819
Target:  5'- uGGGCGCCcCCUCUaugGGUcaaacAGAGAAAGa -3'
miRNA:   3'- -CCCGCGGuGGGGA---UCAua---UUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 19084 0.7 0.996819
Target:  5'- uGGGCGCUACgCCU-GUAUGGu----- -3'
miRNA:   3'- -CCCGCGGUGgGGAuCAUAUUuuuuuc -5'
3575 3' -46.9 NC_001650.1 + 136829 0.7 0.996819
Target:  5'- aGGGCGCCccgacGCCCCcGGgcgGUGGGcuGGGu -3'
miRNA:   3'- -CCCGCGG-----UGGGGaUCa--UAUUUuuUUC- -5'
3575 3' -46.9 NC_001650.1 + 11893 0.7 0.996819
Target:  5'- uGGGCGCCcCCUCUaugGGUcaaacAGAGAAAGa -3'
miRNA:   3'- -CCCGCGGuGGGGA---UCAua---UUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 58139 0.7 0.996819
Target:  5'- aGGGUGCCGCCCCcGGc---------- -3'
miRNA:   3'- -CCCGCGGUGGGGaUCauauuuuuuuc -5'
3575 3' -46.9 NC_001650.1 + 13922 0.7 0.99732
Target:  5'- aGGCGCC-CCCCUGGa---------- -3'
miRNA:   3'- cCCGCGGuGGGGAUCauauuuuuuuc -5'
3575 3' -46.9 NC_001650.1 + 50488 0.7 0.997753
Target:  5'- gGGGCGCUACCCCa------------- -3'
miRNA:   3'- -CCCGCGGUGGGGaucauauuuuuuuc -5'
3575 3' -46.9 NC_001650.1 + 149927 0.69 0.998446
Target:  5'- aGGCGCUACCCCUGa----------- -3'
miRNA:   3'- cCCGCGGUGGGGAUcauauuuuuuuc -5'
3575 3' -46.9 NC_001650.1 + 158794 0.69 0.998446
Target:  5'- cGGCGUCGCUCCUGccccUGAGGAGGGu -3'
miRNA:   3'- cCCGCGGUGGGGAUcau-AUUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 32423 0.69 0.998446
Target:  5'- -uGCGCCAcCCCCUGGc---AGAGAAGc -3'
miRNA:   3'- ccCGCGGU-GGGGAUCauauUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 79101 0.69 0.998718
Target:  5'- cGGGCGCgGCCgCUcggcGGgcgGGAGGAGGg -3'
miRNA:   3'- -CCCGCGgUGGgGA----UCauaUUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 88341 0.69 0.998718
Target:  5'- aGGGCuucgguuugGCCGCUCggGGUAUAAGAAAc- -3'
miRNA:   3'- -CCCG---------CGGUGGGgaUCAUAUUUUUUuc -5'
3575 3' -46.9 NC_001650.1 + 67627 0.69 0.998718
Target:  5'- cGGGUGCCAagUUCCUaaacGGUAUGGuGAAGGu -3'
miRNA:   3'- -CCCGCGGU--GGGGA----UCAUAUUuUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 57029 0.69 0.998949
Target:  5'- cGGCGUCACCCuCUGc---GAGGAAAGg -3'
miRNA:   3'- cCCGCGGUGGG-GAUcauaUUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 157948 0.69 0.998949
Target:  5'- -cGCGCC-CCCCUAuGUGUAcAGGAGc -3'
miRNA:   3'- ccCGCGGuGGGGAU-CAUAUuUUUUUc -5'
3575 3' -46.9 NC_001650.1 + 116286 0.69 0.999088
Target:  5'- aGGGCgGCCGCgcugcuguuuaacaCCCUGGUGccggacgAGGAGAAGc -3'
miRNA:   3'- -CCCG-CGGUG--------------GGGAUCAUa------UUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 29953 0.69 0.999143
Target:  5'- gGGGCGCgGCCgCCUGGg---------- -3'
miRNA:   3'- -CCCGCGgUGG-GGAUCauauuuuuuuc -5'
3575 3' -46.9 NC_001650.1 + 18090 0.68 0.999306
Target:  5'- uGGGgGCUcuaACCUCUGaUAUGGGGGAAGa -3'
miRNA:   3'- -CCCgCGG---UGGGGAUcAUAUUUUUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.