miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3575 3' -46.9 NC_001650.1 + 34478 0.72 0.987912
Target:  5'- cGGGCGCgCACCC--GGUGUcAGAAGAc -3'
miRNA:   3'- -CCCGCG-GUGGGgaUCAUAuUUUUUUc -5'
3575 3' -46.9 NC_001650.1 + 37366 0.67 0.99978
Target:  5'- -uGCGCCugCCCUGGaagGUGAc----- -3'
miRNA:   3'- ccCGCGGugGGGAUCa--UAUUuuuuuc -5'
3575 3' -46.9 NC_001650.1 + 40581 0.66 0.999957
Target:  5'- -cGCGCC-CCCCUcgugGGUGUuuGGGAAc -3'
miRNA:   3'- ccCGCGGuGGGGA----UCAUAuuUUUUUc -5'
3575 3' -46.9 NC_001650.1 + 44029 0.67 0.99978
Target:  5'- uGGGCGCCACCUUgUGGccAUAAGGc--- -3'
miRNA:   3'- -CCCGCGGUGGGG-AUCa-UAUUUUuuuc -5'
3575 3' -46.9 NC_001650.1 + 44712 0.66 0.999948
Target:  5'- uGGaGCGCUGcagggucuguaaaucCCCCUGGUGUGAu----- -3'
miRNA:   3'- -CC-CGCGGU---------------GGGGAUCAUAUUuuuuuc -5'
3575 3' -46.9 NC_001650.1 + 46723 0.71 0.995442
Target:  5'- aGGGCGCCcggucgccgccGCCCCgacgccgGGGAGAGGg -3'
miRNA:   3'- -CCCGCGG-----------UGGGGaucaua-UUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 47831 0.66 0.999968
Target:  5'- aGGGcCGCCGCCCUcuuUGGgaccAUGcuuGAGGGGg -3'
miRNA:   3'- -CCC-GCGGUGGGG---AUCa---UAUu--UUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 50488 0.7 0.997753
Target:  5'- gGGGCGCUACCCCa------------- -3'
miRNA:   3'- -CCCGCGGUGGGGaucauauuuuuuuc -5'
3575 3' -46.9 NC_001650.1 + 50754 0.66 0.999976
Target:  5'- uGGGCGCCGCCaCCa------------- -3'
miRNA:   3'- -CCCGCGGUGG-GGaucauauuuuuuuc -5'
3575 3' -46.9 NC_001650.1 + 52859 0.66 0.999968
Target:  5'- gGGcGCGCCuCCUCUcGUAgcAGGAGGGc -3'
miRNA:   3'- -CC-CGCGGuGGGGAuCAUauUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 57029 0.69 0.998949
Target:  5'- cGGCGUCACCCuCUGc---GAGGAAAGg -3'
miRNA:   3'- cCCGCGGUGGG-GAUcauaUUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 58139 0.7 0.996819
Target:  5'- aGGGUGCCGCCCCcGGc---------- -3'
miRNA:   3'- -CCCGCGGUGGGGaUCauauuuuuuuc -5'
3575 3' -46.9 NC_001650.1 + 59960 0.67 0.999899
Target:  5'- gGGGCGCCucGCCCCcGGg---------- -3'
miRNA:   3'- -CCCGCGG--UGGGGaUCauauuuuuuuc -5'
3575 3' -46.9 NC_001650.1 + 60641 0.72 0.984451
Target:  5'- gGGGgGCCACCgucuccagcugCCUGGgguUGGAGAAGGc -3'
miRNA:   3'- -CCCgCGGUGG-----------GGAUCau-AUUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 61021 0.67 0.999775
Target:  5'- aGGGCaGCCACUgggacugCCUcGUGUAGAGGcccGAGa -3'
miRNA:   3'- -CCCG-CGGUGG-------GGAuCAUAUUUUU---UUC- -5'
3575 3' -46.9 NC_001650.1 + 62805 0.67 0.999829
Target:  5'- cGGGCuGCUGCCuCCUgAGUAUGGGc---- -3'
miRNA:   3'- -CCCG-CGGUGG-GGA-UCAUAUUUuuuuc -5'
3575 3' -46.9 NC_001650.1 + 62898 0.67 0.999829
Target:  5'- gGGGCGCgACCCCcagAGaUGUGu------ -3'
miRNA:   3'- -CCCGCGgUGGGGa--UC-AUAUuuuuuuc -5'
3575 3' -46.9 NC_001650.1 + 64852 0.66 0.999942
Target:  5'- -aGCGCC-CCCCUgcggaGGUAUAGugGAAc -3'
miRNA:   3'- ccCGCGGuGGGGA-----UCAUAUUuuUUUc -5'
3575 3' -46.9 NC_001650.1 + 67627 0.69 0.998718
Target:  5'- cGGGUGCCAagUUCCUaaacGGUAUGGuGAAGGu -3'
miRNA:   3'- -CCCGCGGU--GGGGA----UCAUAUUuUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 69909 0.66 0.999957
Target:  5'- gGGGCcuGCUgguACCCCgUGGUggucgagaAUGAAGAGGGg -3'
miRNA:   3'- -CCCG--CGG---UGGGG-AUCA--------UAUUUUUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.