miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3575 3' -46.9 NC_001650.1 + 1642 0.7 0.996243
Target:  5'- gGGGgGCCGgCCUugUGGUGUGAGGuAAGc -3'
miRNA:   3'- -CCCgCGGUgGGG--AUCAUAUUUUuUUC- -5'
3575 3' -46.9 NC_001650.1 + 4177 1.14 0.013913
Target:  5'- cGGGCGCCACCCCUAGUAUAAAAAAAGa -3'
miRNA:   3'- -CCCGCGGUGGGGAUCAUAUUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 5497 0.71 0.995585
Target:  5'- aGGGCGCUGCCaUCU--UGUGGGAGGAGc -3'
miRNA:   3'- -CCCGCGGUGG-GGAucAUAUUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 11893 0.7 0.996819
Target:  5'- uGGGCGCCcCCUCUaugGGUcaaacAGAGAAAGa -3'
miRNA:   3'- -CCCGCGGuGGGGA---UCAua---UUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 12300 0.66 0.999957
Target:  5'- uGGgGCCAuCCuCCUuccUAUAAGAAAAGa -3'
miRNA:   3'- cCCgCGGU-GG-GGAuc-AUAUUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 13922 0.7 0.99732
Target:  5'- aGGCGCC-CCCCUGGa---------- -3'
miRNA:   3'- cCCGCGGuGGGGAUCauauuuuuuuc -5'
3575 3' -46.9 NC_001650.1 + 14113 0.66 0.999968
Target:  5'- gGGGCGCCucuCUCCgggGGaagccUGUAAGGAuGGg -3'
miRNA:   3'- -CCCGCGGu--GGGGa--UC-----AUAUUUUUuUC- -5'
3575 3' -46.9 NC_001650.1 + 16884 0.66 0.999953
Target:  5'- gGGGUcaGCCAuauugguagggagcCCCCUGuGcAUGAGAGAGGg -3'
miRNA:   3'- -CCCG--CGGU--------------GGGGAU-CaUAUUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 17387 0.68 0.999553
Target:  5'- uGGGCGaCCACCUCgggGGUGg-------- -3'
miRNA:   3'- -CCCGC-GGUGGGGa--UCAUauuuuuuuc -5'
3575 3' -46.9 NC_001650.1 + 18006 0.75 0.936753
Target:  5'- gGGGCGCuCugCC--AGUAUGGGGAGAGa -3'
miRNA:   3'- -CCCGCG-GugGGgaUCAUAUUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 18090 0.68 0.999306
Target:  5'- uGGGgGCUcuaACCUCUGaUAUGGGGGAAGa -3'
miRNA:   3'- -CCCgCGG---UGGGGAUcAUAUUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 19084 0.7 0.996819
Target:  5'- uGGGCGCUACgCCU-GUAUGGu----- -3'
miRNA:   3'- -CCCGCGGUGgGGAuCAUAUUuuuuuc -5'
3575 3' -46.9 NC_001650.1 + 21799 0.73 0.975069
Target:  5'- aGGGCGCCggccgagGCCCCgGGg--AGGGGGAGg -3'
miRNA:   3'- -CCCGCGG-------UGGGGaUCauaUUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 27874 0.66 0.999976
Target:  5'- uGGcGCGCCAgCaUCUGGggcgAGAAGGAGg -3'
miRNA:   3'- -CC-CGCGGUgG-GGAUCaua-UUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 28565 0.72 0.989401
Target:  5'- aGGGCGCUcaugauggcGCCCCgGGUgAUGAAGAucAAGa -3'
miRNA:   3'- -CCCGCGG---------UGGGGaUCA-UAUUUUU--UUC- -5'
3575 3' -46.9 NC_001650.1 + 28769 0.67 0.999899
Target:  5'- gGGGCGCCAUcaugagcgCCCUGG-AUAu------ -3'
miRNA:   3'- -CCCGCGGUG--------GGGAUCaUAUuuuuuuc -5'
3575 3' -46.9 NC_001650.1 + 29953 0.69 0.999143
Target:  5'- gGGGCGCgGCCgCCUGGg---------- -3'
miRNA:   3'- -CCCGCGgUGG-GGAUCauauuuuuuuc -5'
3575 3' -46.9 NC_001650.1 + 31988 0.67 0.999868
Target:  5'- cGGaGuCCGCCUCUGGUGagcUAGGGGAGGg -3'
miRNA:   3'- cCCgC-GGUGGGGAUCAU---AUUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 32127 0.73 0.982461
Target:  5'- uGGGCGUCGCCaggCCUcuGUGUAAAAcAAGa -3'
miRNA:   3'- -CCCGCGGUGG---GGAu-CAUAUUUUuUUC- -5'
3575 3' -46.9 NC_001650.1 + 32423 0.69 0.998446
Target:  5'- -uGCGCCAcCCCCUGGc---AGAGAAGc -3'
miRNA:   3'- ccCGCGGU-GGGGAUCauauUUUUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.