miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3575 3' -46.9 NC_001650.1 + 61021 0.67 0.999775
Target:  5'- aGGGCaGCCACUgggacugCCUcGUGUAGAGGcccGAGa -3'
miRNA:   3'- -CCCG-CGGUGG-------GGAuCAUAUUUUU---UUC- -5'
3575 3' -46.9 NC_001650.1 + 172204 0.71 0.995585
Target:  5'- aGGGCGCUGCCaUCU--UGUGGGAGGAGc -3'
miRNA:   3'- -CCCGCGGUGG-GGAucAUAUUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 19084 0.7 0.996819
Target:  5'- uGGGCGCUACgCCU-GUAUGGu----- -3'
miRNA:   3'- -CCCGCGGUGgGGAuCAUAUUuuuuuc -5'
3575 3' -46.9 NC_001650.1 + 13922 0.7 0.99732
Target:  5'- aGGCGCC-CCCCUGGa---------- -3'
miRNA:   3'- cCCGCGGuGGGGAUCauauuuuuuuc -5'
3575 3' -46.9 NC_001650.1 + 50488 0.7 0.997753
Target:  5'- gGGGCGCUACCCCa------------- -3'
miRNA:   3'- -CCCGCGGUGGGGaucauauuuuuuuc -5'
3575 3' -46.9 NC_001650.1 + 158794 0.69 0.998446
Target:  5'- cGGCGUCGCUCCUGccccUGAGGAGGGu -3'
miRNA:   3'- cCCGCGGUGGGGAUcau-AUUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 79101 0.69 0.998718
Target:  5'- cGGGCGCgGCCgCUcggcGGgcgGGAGGAGGg -3'
miRNA:   3'- -CCCGCGgUGGgGA----UCauaUUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 18090 0.68 0.999306
Target:  5'- uGGGgGCUcuaACCUCUGaUAUGGGGGAAGa -3'
miRNA:   3'- -CCCgCGG---UGGGGAUcAUAUUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 102782 0.68 0.999719
Target:  5'- cGGCGCCGgccuCCCCUcccAGcAUGAGGAAc- -3'
miRNA:   3'- cCCGCGGU----GGGGA---UCaUAUUUUUUuc -5'
3575 3' -46.9 NC_001650.1 + 113118 0.71 0.995585
Target:  5'- -cGCGCaaaagACCCCUAGg--GAGAGGAGg -3'
miRNA:   3'- ccCGCGg----UGGGGAUCauaUUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 5497 0.71 0.995585
Target:  5'- aGGGCGCUGCCaUCU--UGUGGGAGGAGc -3'
miRNA:   3'- -CCCGCGGUGG-GGAucAUAUUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 80649 0.71 0.993026
Target:  5'- cGGGUGCguCCCCUGccacgGGAGGAAGa -3'
miRNA:   3'- -CCCGCGguGGGGAUcaua-UUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 157594 0.75 0.936753
Target:  5'- -cGCGCCGCCCCUGGgcaacAGAGAAc -3'
miRNA:   3'- ccCGCGGUGGGGAUCauau-UUUUUUc -5'
3575 3' -46.9 NC_001650.1 + 127066 0.75 0.941746
Target:  5'- gGGGCGCCggGCCCggggucuccaCUAGUGaAAAAGAAGc -3'
miRNA:   3'- -CCCGCGG--UGGG----------GAUCAUaUUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 21799 0.73 0.975069
Target:  5'- aGGGCGCCggccgagGCCCCgGGg--AGGGGGAGg -3'
miRNA:   3'- -CCCGCGG-------UGGGGaUCauaUUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 141897 0.73 0.980285
Target:  5'- cGGGCGCgCucucCCCCUAGgcUAuuuGAGGGa -3'
miRNA:   3'- -CCCGCG-Gu---GGGGAUCauAUuu-UUUUC- -5'
3575 3' -46.9 NC_001650.1 + 32127 0.73 0.982461
Target:  5'- uGGGCGUCGCCaggCCUcuGUGUAAAAcAAGa -3'
miRNA:   3'- -CCCGCGGUGG---GGAu-CAUAUUUUuUUC- -5'
3575 3' -46.9 NC_001650.1 + 60641 0.72 0.984451
Target:  5'- gGGGgGCCACCgucuccagcugCCUGGgguUGGAGAAGGc -3'
miRNA:   3'- -CCCgCGGUGG-----------GGAUCau-AUUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 34478 0.72 0.987912
Target:  5'- cGGGCGCgCACCC--GGUGUcAGAAGAc -3'
miRNA:   3'- -CCCGCG-GUGGGgaUCAUAuUUUUUUc -5'
3575 3' -46.9 NC_001650.1 + 28565 0.72 0.989401
Target:  5'- aGGGCGCUcaugauggcGCCCCgGGUgAUGAAGAucAAGa -3'
miRNA:   3'- -CCCGCGG---------UGGGGaUCA-UAUUUUU--UUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.