miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3575 3' -46.9 NC_001650.1 + 170884 1.14 0.013913
Target:  5'- cGGGCGCCACCCCUAGUAUAAAAAAAGa -3'
miRNA:   3'- -CCCGCGGUGGGGAUCAUAUUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 157948 0.69 0.998949
Target:  5'- -cGCGCC-CCCCUAuGUGUAcAGGAGc -3'
miRNA:   3'- ccCGCGGuGGGGAU-CAUAUuUUUUUc -5'
3575 3' -46.9 NC_001650.1 + 116286 0.69 0.999088
Target:  5'- aGGGCgGCCGCgcugcuguuuaacaCCCUGGUGccggacgAGGAGAAGc -3'
miRNA:   3'- -CCCG-CGGUG--------------GGGAUCAUa------UUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 27874 0.66 0.999976
Target:  5'- uGGcGCGCCAgCaUCUGGggcgAGAAGGAGg -3'
miRNA:   3'- -CC-CGCGGUgG-GGAUCaua-UUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 46723 0.71 0.995442
Target:  5'- aGGGCGCCcggucgccgccGCCCCgacgccgGGGAGAGGg -3'
miRNA:   3'- -CCCGCGG-----------UGGGGaucaua-UUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 109475 0.7 0.996181
Target:  5'- gGGGCGCCccccacuaucgccACCCCgcGgg-GAAGGGGGg -3'
miRNA:   3'- -CCCGCGG-------------UGGGGauCauaUUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 79608 0.7 0.996243
Target:  5'- gGGGCGCCGCCCggGGg---------- -3'
miRNA:   3'- -CCCGCGGUGGGgaUCauauuuuuuuc -5'
3575 3' -46.9 NC_001650.1 + 1642 0.7 0.996243
Target:  5'- gGGGgGCCGgCCUugUGGUGUGAGGuAAGc -3'
miRNA:   3'- -CCCgCGGUgGGG--AUCAUAUUUUuUUC- -5'
3575 3' -46.9 NC_001650.1 + 178600 0.7 0.996819
Target:  5'- uGGGCGCCcCCUCUaugGGUcaaacAGAGAAAGa -3'
miRNA:   3'- -CCCGCGGuGGGGA---UCAua---UUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 67627 0.69 0.998718
Target:  5'- cGGGUGCCAagUUCCUaaacGGUAUGGuGAAGGu -3'
miRNA:   3'- -CCCGCGGU--GGGGA----UCAUAUUuUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 149927 0.69 0.998446
Target:  5'- aGGCGCUACCCCUGa----------- -3'
miRNA:   3'- cCCGCGGUGGGGAUcauauuuuuuuc -5'
3575 3' -46.9 NC_001650.1 + 58139 0.7 0.996819
Target:  5'- aGGGUGCCGCCCCcGGc---------- -3'
miRNA:   3'- -CCCGCGGUGGGGaUCauauuuuuuuc -5'
3575 3' -46.9 NC_001650.1 + 4177 1.14 0.013913
Target:  5'- cGGGCGCCACCCCUAGUAUAAAAAAAGa -3'
miRNA:   3'- -CCCGCGGUGGGGAUCAUAUUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 32423 0.69 0.998446
Target:  5'- -uGCGCCAcCCCCUGGc---AGAGAAGc -3'
miRNA:   3'- ccCGCGGU-GGGGAUCauauUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 127335 0.72 0.989259
Target:  5'- gGGGC-CCGguggucuCCCCU-GUGUGGGAAAAGg -3'
miRNA:   3'- -CCCGcGGU-------GGGGAuCAUAUUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 136829 0.7 0.996819
Target:  5'- aGGGCGCCccgacGCCCCcGGgcgGUGGGcuGGGu -3'
miRNA:   3'- -CCCGCGG-----UGGGGaUCa--UAUUUuuUUC- -5'
3575 3' -46.9 NC_001650.1 + 88341 0.69 0.998718
Target:  5'- aGGGCuucgguuugGCCGCUCggGGUAUAAGAAAc- -3'
miRNA:   3'- -CCCG---------CGGUGGGgaUCAUAUUUUUUuc -5'
3575 3' -46.9 NC_001650.1 + 57029 0.69 0.998949
Target:  5'- cGGCGUCACCCuCUGc---GAGGAAAGg -3'
miRNA:   3'- cCCGCGGUGGG-GAUcauaUUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 111282 0.71 0.991949
Target:  5'- uGGCGCCgcuggaGCCCCUGGgGUAGGGc--- -3'
miRNA:   3'- cCCGCGG------UGGGGAUCaUAUUUUuuuc -5'
3575 3' -46.9 NC_001650.1 + 168349 0.7 0.996243
Target:  5'- gGGGgGCCGgCCUugUGGUGUGAGGuAAGc -3'
miRNA:   3'- -CCCgCGGUgGGG--AUCAUAUUUUuUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.