miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3575 3' -46.9 NC_001650.1 + 184094 0.68 0.999553
Target:  5'- uGGGCGaCCACCUCgggGGUGg-------- -3'
miRNA:   3'- -CCCGC-GGUGGGGa--UCAUauuuuuuuc -5'
3575 3' -46.9 NC_001650.1 + 183591 0.66 0.999953
Target:  5'- gGGGUcaGCCAuauugguagggagcCCCCUGuGcAUGAGAGAGGg -3'
miRNA:   3'- -CCCG--CGGU--------------GGGGAU-CaUAUUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 180820 0.66 0.999968
Target:  5'- gGGGCGCCucuCUCCgggGGaagccUGUAAGGAuGGg -3'
miRNA:   3'- -CCCGCGGu--GGGGa--UC-----AUAUUUUUuUC- -5'
3575 3' -46.9 NC_001650.1 + 179007 0.66 0.999957
Target:  5'- uGGgGCCAuCCuCCUuccUAUAAGAAAAGa -3'
miRNA:   3'- cCCgCGGU-GG-GGAuc-AUAUUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 178600 0.7 0.996819
Target:  5'- uGGGCGCCcCCUCUaugGGUcaaacAGAGAAAGa -3'
miRNA:   3'- -CCCGCGGuGGGGA---UCAua---UUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 172204 0.71 0.995585
Target:  5'- aGGGCGCUGCCaUCU--UGUGGGAGGAGc -3'
miRNA:   3'- -CCCGCGGUGG-GGAucAUAUUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 170884 1.14 0.013913
Target:  5'- cGGGCGCCACCCCUAGUAUAAAAAAAGa -3'
miRNA:   3'- -CCCGCGGUGGGGAUCAUAUUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 168349 0.7 0.996243
Target:  5'- gGGGgGCCGgCCUugUGGUGUGAGGuAAGc -3'
miRNA:   3'- -CCCgCGGUgGGG--AUCAUAUUUUuUUC- -5'
3575 3' -46.9 NC_001650.1 + 165364 0.66 0.999942
Target:  5'- cGGCGa-GCCCCUAcGUGUGAGc---- -3'
miRNA:   3'- cCCGCggUGGGGAU-CAUAUUUuuuuc -5'
3575 3' -46.9 NC_001650.1 + 158794 0.69 0.998446
Target:  5'- cGGCGUCGCUCCUGccccUGAGGAGGGu -3'
miRNA:   3'- cCCGCGGUGGGGAUcau-AUUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 158453 0.67 0.99978
Target:  5'- cGGcCGCCAgcCCCCUGGUGa-------- -3'
miRNA:   3'- cCC-GCGGU--GGGGAUCAUauuuuuuuc -5'
3575 3' -46.9 NC_001650.1 + 157948 0.69 0.998949
Target:  5'- -cGCGCC-CCCCUAuGUGUAcAGGAGc -3'
miRNA:   3'- ccCGCGGuGGGGAU-CAUAUuUUUUUc -5'
3575 3' -46.9 NC_001650.1 + 157594 0.75 0.936753
Target:  5'- -cGCGCCGCCCCUGGgcaacAGAGAAc -3'
miRNA:   3'- ccCGCGGUGGGGAUCauau-UUUUUUc -5'
3575 3' -46.9 NC_001650.1 + 155649 0.68 0.999441
Target:  5'- cGGUGCCGCCgCCggagGGggcgGGGAGGGGg -3'
miRNA:   3'- cCCGCGGUGG-GGa---UCaua-UUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 149927 0.69 0.998446
Target:  5'- aGGCGCUACCCCUGa----------- -3'
miRNA:   3'- cCCGCGGUGGGGAUcauauuuuuuuc -5'
3575 3' -46.9 NC_001650.1 + 143786 0.67 0.99978
Target:  5'- aGGC-CCACaCCCUGGUGUccAAcgGGg -3'
miRNA:   3'- cCCGcGGUG-GGGAUCAUAuuUUuuUC- -5'
3575 3' -46.9 NC_001650.1 + 141897 0.73 0.980285
Target:  5'- cGGGCGCgCucucCCCCUAGgcUAuuuGAGGGa -3'
miRNA:   3'- -CCCGCG-Gu---GGGGAUCauAUuu-UUUUC- -5'
3575 3' -46.9 NC_001650.1 + 136829 0.7 0.996819
Target:  5'- aGGGCGCCccgacGCCCCcGGgcgGUGGGcuGGGu -3'
miRNA:   3'- -CCCGCGG-----UGGGGaUCa--UAUUUuuUUC- -5'
3575 3' -46.9 NC_001650.1 + 134955 0.66 0.999976
Target:  5'- gGGGCGCCGCCuCCa------------- -3'
miRNA:   3'- -CCCGCGGUGG-GGaucauauuuuuuuc -5'
3575 3' -46.9 NC_001650.1 + 133100 0.68 0.999441
Target:  5'- cGGGCGCCACCgCCUc------------ -3'
miRNA:   3'- -CCCGCGGUGG-GGAucauauuuuuuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.