miRNA display CGI


Results 41 - 60 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3575 5' -54.4 NC_001650.1 + 29203 0.67 0.935911
Target:  5'- gGUCUGGaucuuggggguCAGGCAgugGAUGGuGGUGGCg -3'
miRNA:   3'- aCGGACC-----------GUCUGUaa-UUGCC-UCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 2479 0.67 0.930869
Target:  5'- uUGCCgGGCAGGguuCAgUGugGGGGgGuGCa -3'
miRNA:   3'- -ACGGaCCGUCU---GUaAUugCCUCgC-CG- -5'
3575 5' -54.4 NC_001650.1 + 123999 0.67 0.930869
Target:  5'- cGCCgaGGUGGACAU---CGGGaaccacGCGGCg -3'
miRNA:   3'- aCGGa-CCGUCUGUAauuGCCU------CGCCG- -5'
3575 5' -54.4 NC_001650.1 + 169761 0.67 0.930869
Target:  5'- uUGCCaGGCAGGuuUUaGAUGGGGgGGUg -3'
miRNA:   3'- -ACGGaCCGUCUguAA-UUGCCUCgCCG- -5'
3575 5' -54.4 NC_001650.1 + 3054 0.67 0.930869
Target:  5'- uUGCCaGGCAGGuuUUaGAUGGGGgGGUg -3'
miRNA:   3'- -ACGGaCCGUCUguAA-UUGCCUCgCCG- -5'
3575 5' -54.4 NC_001650.1 + 128299 0.67 0.930869
Target:  5'- aGCCgggGGUcaaGGACAggGccuucGCGGAgGCGGUg -3'
miRNA:   3'- aCGGa--CCG---UCUGUaaU-----UGCCU-CGCCG- -5'
3575 5' -54.4 NC_001650.1 + 55593 0.67 0.930869
Target:  5'- gGCUUGGUuagagAGACGguca-GGuAGCGGCg -3'
miRNA:   3'- aCGGACCG-----UCUGUaauugCC-UCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 84409 0.67 0.930869
Target:  5'- gGCCUGaGCAucGGgGUcuccAGCGGGGCGGa -3'
miRNA:   3'- aCGGAC-CGU--CUgUAa---UUGCCUCGCCg -5'
3575 5' -54.4 NC_001650.1 + 169186 0.67 0.930869
Target:  5'- uUGCCgGGCAGGguuCAgUGugGGGGgGuGCa -3'
miRNA:   3'- -ACGGaCCGUCU---GUaAUugCCUCgC-CG- -5'
3575 5' -54.4 NC_001650.1 + 120852 0.67 0.930869
Target:  5'- aGCgCUGGCuGGCGcucuccuACGcGGCGGCg -3'
miRNA:   3'- aCG-GACCGuCUGUaau----UGCcUCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 72934 0.67 0.929831
Target:  5'- gUGCCccccaccaucaUGGCAGAguacga-GGAGUGGCa -3'
miRNA:   3'- -ACGG-----------ACCGUCUguaauugCCUCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 118537 0.67 0.925043
Target:  5'- cUGCCUGaGCccugccgAGcGCAUgacCGGGGUGGCg -3'
miRNA:   3'- -ACGGAC-CG-------UC-UGUAauuGCCUCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 175567 0.68 0.92006
Target:  5'- cGCCcccucGCGGACGcu-GCcugGGAGCGGCg -3'
miRNA:   3'- aCGGac---CGUCUGUaauUG---CCUCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 106119 0.68 0.92006
Target:  5'- gGCCUGGCc-ACA--AGgGGGGUGGUg -3'
miRNA:   3'- aCGGACCGucUGUaaUUgCCUCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 36700 0.68 0.92006
Target:  5'- cUGCCagUGGaCAGGCAc--GCGGAcGCGGa -3'
miRNA:   3'- -ACGG--ACC-GUCUGUaauUGCCU-CGCCg -5'
3575 5' -54.4 NC_001650.1 + 8860 0.68 0.92006
Target:  5'- cGCCcccucGCGGACGcu-GCcugGGAGCGGCg -3'
miRNA:   3'- aCGGac---CGUCUGUaauUG---CCUCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 99612 0.68 0.92006
Target:  5'- gGCUUGGCAGAUgaUAuguGGAGCaguggaGGCg -3'
miRNA:   3'- aCGGACCGUCUGuaAUug-CCUCG------CCG- -5'
3575 5' -54.4 NC_001650.1 + 169472 0.68 0.92006
Target:  5'- uUGCCgGGCAGAUuug---GGAGUGGg -3'
miRNA:   3'- -ACGGaCCGUCUGuaauugCCUCGCCg -5'
3575 5' -54.4 NC_001650.1 + 148821 0.68 0.92006
Target:  5'- cGCCUGGgGGAgGgUggUGGGGgGuGCa -3'
miRNA:   3'- aCGGACCgUCUgUaAuuGCCUCgC-CG- -5'
3575 5' -54.4 NC_001650.1 + 57357 0.68 0.916629
Target:  5'- cGCCUGGUGGcCGUUGugGGucacugugaccuguGgGGCc -3'
miRNA:   3'- aCGGACCGUCuGUAAUugCCu-------------CgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.