miRNA display CGI


Results 21 - 40 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3575 5' -54.4 NC_001650.1 + 79091 0.66 0.953697
Target:  5'- gGCCUGGCuccGGGCGcggccgcucGGCGG-GCGGg -3'
miRNA:   3'- aCGGACCG---UCUGUaa-------UUGCCuCGCCg -5'
3575 5' -54.4 NC_001650.1 + 4243 0.66 0.951679
Target:  5'- aUGCCUGGCAGGCcgaGUUccccauuucuggccAAUGGGGacucuguccgugGGCg -3'
miRNA:   3'- -ACGGACCGUCUG---UAA--------------UUGCCUCg-----------CCG- -5'
3575 5' -54.4 NC_001650.1 + 170950 0.66 0.951679
Target:  5'- aUGCCUGGCAGGCcgaGUUccccauuucuggccAAUGGGGacucuguccgugGGCg -3'
miRNA:   3'- -ACGGACCGUCUG---UAA--------------UUGCCUCg-----------CCG- -5'
3575 5' -54.4 NC_001650.1 + 148907 0.66 0.949604
Target:  5'- aGCCgucacagucuuUGGCaAGAacCAUcgcUAugGGGGCGGUa -3'
miRNA:   3'- aCGG-----------ACCG-UCU--GUA---AUugCCUCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 64728 0.67 0.945277
Target:  5'- -cCCUGGUaguguaaaAGACAUUGugGGucGCGuGCu -3'
miRNA:   3'- acGGACCG--------UCUGUAAUugCCu-CGC-CG- -5'
3575 5' -54.4 NC_001650.1 + 45096 0.67 0.945277
Target:  5'- -cCCUGaGCGGGCu---GCGGcuuGCGGCc -3'
miRNA:   3'- acGGAC-CGUCUGuaauUGCCu--CGCCG- -5'
3575 5' -54.4 NC_001650.1 + 79601 0.67 0.945277
Target:  5'- cGCCcgggGGCGcGACGgggcGCGGguAGUGGCa -3'
miRNA:   3'- aCGGa---CCGU-CUGUaau-UGCC--UCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 142636 0.67 0.945277
Target:  5'- gGCC-GGCGGAgGgggcuGCGGcugcuGCGGCc -3'
miRNA:   3'- aCGGaCCGUCUgUaau--UGCCu----CGCCG- -5'
3575 5' -54.4 NC_001650.1 + 88455 0.67 0.945277
Target:  5'- cGCCUacuucuucucccaGaGCAGGCAggaguucuccuccgGGCGGGGCGGg -3'
miRNA:   3'- aCGGA-------------C-CGUCUGUaa------------UUGCCUCGCCg -5'
3575 5' -54.4 NC_001650.1 + 53201 0.67 0.945277
Target:  5'- aGCCcGGCucGCGUcccgGGCGGcccgaAGCGGCg -3'
miRNA:   3'- aCGGaCCGucUGUAa---UUGCC-----UCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 169623 0.67 0.945277
Target:  5'- gGCCcaggggGGCuGucCAUUAAUGGAGCaGCc -3'
miRNA:   3'- aCGGa-----CCGuCu-GUAAUUGCCUCGcCG- -5'
3575 5' -54.4 NC_001650.1 + 2916 0.67 0.945277
Target:  5'- gGCCcaggggGGCuGucCAUUAAUGGAGCaGCc -3'
miRNA:   3'- aCGGa-----CCGuCu-GUAAUUGCCUCGcCG- -5'
3575 5' -54.4 NC_001650.1 + 119097 0.67 0.944831
Target:  5'- gGCCauGUAGACGggGACGGGcaugcccagaugcGCGGCc -3'
miRNA:   3'- aCGGacCGUCUGUaaUUGCCU-------------CGCCG- -5'
3575 5' -54.4 NC_001650.1 + 109169 0.67 0.944831
Target:  5'- cUGCCcccGGCccgagugGGACGagccgUAcGCGGGGCGGCc -3'
miRNA:   3'- -ACGGa--CCG-------UCUGUa----AU-UGCCUCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 124308 0.67 0.944831
Target:  5'- gGCCgcGGCGGACGaggUGGCGcGAGUccuccccaacacgGGCg -3'
miRNA:   3'- aCGGa-CCGUCUGUa--AUUGC-CUCG-------------CCG- -5'
3575 5' -54.4 NC_001650.1 + 1906 0.67 0.940714
Target:  5'- uUGCCaGGCAGGguUUAGaguggggGGuGCGGUa -3'
miRNA:   3'- -ACGGaCCGUCUguAAUUg------CCuCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 168613 0.67 0.940714
Target:  5'- uUGCCaGGCAGGguUUAGaguggggGGuGCGGUa -3'
miRNA:   3'- -ACGGaCCGUCUguAAUUg------CCuCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 156402 0.67 0.935911
Target:  5'- gGcCCUGGcCGGGCAgu-GCGGGGUGa- -3'
miRNA:   3'- aC-GGACC-GUCUGUaauUGCCUCGCcg -5'
3575 5' -54.4 NC_001650.1 + 131547 0.67 0.935911
Target:  5'- cGCCcgggGGCuGGAC----GCGGGGCGGa -3'
miRNA:   3'- aCGGa---CCG-UCUGuaauUGCCUCGCCg -5'
3575 5' -54.4 NC_001650.1 + 29203 0.67 0.935911
Target:  5'- gGUCUGGaucuuggggguCAGGCAgugGAUGGuGGUGGCg -3'
miRNA:   3'- aCGGACC-----------GUCUGUaa-UUGCC-UCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.