Results 21 - 40 of 156 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3575 | 5' | -54.4 | NC_001650.1 | + | 148907 | 0.66 | 0.949604 |
Target: 5'- aGCCgucacagucuuUGGCaAGAacCAUcgcUAugGGGGCGGUa -3' miRNA: 3'- aCGG-----------ACCG-UCU--GUA---AUugCCUCGCCG- -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 138974 | 0.66 | 0.953697 |
Target: 5'- gGCCaugcUGGCAGACAggGGCcauGCuGGCa -3' miRNA: 3'- aCGG----ACCGUCUGUaaUUGccuCG-CCG- -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 133140 | 0.66 | 0.953697 |
Target: 5'- cGCCgcgGGgGGACccu--CGG-GCGGCu -3' miRNA: 3'- aCGGa--CCgUCUGuaauuGCCuCGCCG- -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 113820 | 0.66 | 0.957559 |
Target: 5'- aUGaCCgcGGCGGGCGUguacACGGAcGUGGUc -3' miRNA: 3'- -AC-GGa-CCGUCUGUAau--UGCCU-CGCCG- -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 168613 | 0.67 | 0.940714 |
Target: 5'- uUGCCaGGCAGGguUUAGaguggggGGuGCGGUa -3' miRNA: 3'- -ACGGaCCGUCUguAAUUg------CCuCGCCG- -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 79601 | 0.67 | 0.945277 |
Target: 5'- cGCCcgggGGCGcGACGgggcGCGGguAGUGGCa -3' miRNA: 3'- aCGGa---CCGU-CUGUaau-UGCC--UCGCCG- -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 64728 | 0.67 | 0.945277 |
Target: 5'- -cCCUGGUaguguaaaAGACAUUGugGGucGCGuGCu -3' miRNA: 3'- acGGACCG--------UCUGUAAUugCCu-CGC-CG- -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 169761 | 0.67 | 0.930869 |
Target: 5'- uUGCCaGGCAGGuuUUaGAUGGGGgGGUg -3' miRNA: 3'- -ACGGaCCGUCUguAA-UUGCCUCgCCG- -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 123999 | 0.67 | 0.930869 |
Target: 5'- cGCCgaGGUGGACAU---CGGGaaccacGCGGCg -3' miRNA: 3'- aCGGa-CCGUCUGUAauuGCCU------CGCCG- -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 22705 | 0.67 | 0.935911 |
Target: 5'- gGCCUcgaGGCGGGgccCAUgc-CGG-GCGGCg -3' miRNA: 3'- aCGGA---CCGUCU---GUAauuGCCuCGCCG- -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 55593 | 0.67 | 0.930869 |
Target: 5'- gGCUUGGUuagagAGACGguca-GGuAGCGGCg -3' miRNA: 3'- aCGGACCG-----UCUGUaauugCC-UCGCCG- -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 84409 | 0.67 | 0.930869 |
Target: 5'- gGCCUGaGCAucGGgGUcuccAGCGGGGCGGa -3' miRNA: 3'- aCGGAC-CGU--CUgUAa---UUGCCUCGCCg -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 120852 | 0.67 | 0.930869 |
Target: 5'- aGCgCUGGCuGGCGcucuccuACGcGGCGGCg -3' miRNA: 3'- aCG-GACCGuCUGUaau----UGCcUCGCCG- -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 72934 | 0.67 | 0.929831 |
Target: 5'- gUGCCccccaccaucaUGGCAGAguacga-GGAGUGGCa -3' miRNA: 3'- -ACGG-----------ACCGUCUguaauugCCUCGCCG- -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 119097 | 0.67 | 0.944831 |
Target: 5'- gGCCauGUAGACGggGACGGGcaugcccagaugcGCGGCc -3' miRNA: 3'- aCGGacCGUCUGUaaUUGCCU-------------CGCCG- -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 109169 | 0.67 | 0.944831 |
Target: 5'- cUGCCcccGGCccgagugGGACGagccgUAcGCGGGGCGGCc -3' miRNA: 3'- -ACGGa--CCG-------UCUGUa----AU-UGCCUCGCCG- -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 124308 | 0.67 | 0.944831 |
Target: 5'- gGCCgcGGCGGACGaggUGGCGcGAGUccuccccaacacgGGCg -3' miRNA: 3'- aCGGa-CCGUCUGUa--AUUGC-CUCG-------------CCG- -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 2916 | 0.67 | 0.945277 |
Target: 5'- gGCCcaggggGGCuGucCAUUAAUGGAGCaGCc -3' miRNA: 3'- aCGGa-----CCGuCu-GUAAUUGCCUCGcCG- -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 169623 | 0.67 | 0.945277 |
Target: 5'- gGCCcaggggGGCuGucCAUUAAUGGAGCaGCc -3' miRNA: 3'- aCGGa-----CCGuCu-GUAAUUGCCUCGcCG- -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 118537 | 0.67 | 0.925043 |
Target: 5'- cUGCCUGaGCccugccgAGcGCAUgacCGGGGUGGCg -3' miRNA: 3'- -ACGGAC-CG-------UC-UGUAauuGCCUCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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