miRNA display CGI


Results 21 - 40 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3575 5' -54.4 NC_001650.1 + 7889 0.82 0.254398
Target:  5'- uUGCCUGGCAGAC--UAAgGGGGUGGg -3'
miRNA:   3'- -ACGGACCGUCUGuaAUUgCCUCGCCg -5'
3575 5' -54.4 NC_001650.1 + 8343 0.7 0.835766
Target:  5'- cGCCaaGCAGACugaaGGCGGGGUugGGCa -3'
miRNA:   3'- aCGGacCGUCUGuaa-UUGCCUCG--CCG- -5'
3575 5' -54.4 NC_001650.1 + 8860 0.68 0.92006
Target:  5'- cGCCcccucGCGGACGcu-GCcugGGAGCGGCg -3'
miRNA:   3'- aCGGac---CGUCUGUaauUG---CCUCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 17419 0.66 0.96461
Target:  5'- -cCCUGGCGGcCAUcuuu-GAGCGGCc -3'
miRNA:   3'- acGGACCGUCuGUAauugcCUCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 18121 0.66 0.96461
Target:  5'- aUGCCUcccucGGCGGugGgggUggUGuGGGgGGCa -3'
miRNA:   3'- -ACGGA-----CCGUCugUa--AuuGC-CUCgCCG- -5'
3575 5' -54.4 NC_001650.1 + 22657 0.7 0.835766
Target:  5'- cGCCUcGCAcGACA---GCGGccGGCGGCu -3'
miRNA:   3'- aCGGAcCGU-CUGUaauUGCC--UCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 22705 0.67 0.935911
Target:  5'- gGCCUcgaGGCGGGgccCAUgc-CGG-GCGGCg -3'
miRNA:   3'- aCGGA---CCGUCU---GUAauuGCCuCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 22753 0.66 0.961195
Target:  5'- gGCUUGGgGGAgAUgauggaGGCGcGGGUGGCc -3'
miRNA:   3'- aCGGACCgUCUgUAa-----UUGC-CUCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 24038 0.69 0.867369
Target:  5'- gGCCgucucggGGCAcGACGUcgggGACGGgggccugugGGCGGCc -3'
miRNA:   3'- aCGGa------CCGU-CUGUAa---UUGCC---------UCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 24605 0.66 0.957559
Target:  5'- gGaCCUGGCGcACGUgcucACGGAcgagguguGCGGCc -3'
miRNA:   3'- aC-GGACCGUcUGUAau--UGCCU--------CGCCG- -5'
3575 5' -54.4 NC_001650.1 + 25006 0.72 0.744854
Target:  5'- gUGCCUGGaCAGGCuggUGGCcucGGgccaGGCGGCc -3'
miRNA:   3'- -ACGGACC-GUCUGua-AUUG---CC----UCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 26650 0.68 0.908287
Target:  5'- gGCCUGGguGcccACGUUcuccuccACGGGgcccGCGGCa -3'
miRNA:   3'- aCGGACCguC---UGUAAu------UGCCU----CGCCG- -5'
3575 5' -54.4 NC_001650.1 + 27463 0.66 0.960128
Target:  5'- -aCCUGGCccggguccagaagcAGGCcuccaacCGGGGCGGCg -3'
miRNA:   3'- acGGACCG--------------UCUGuaauu--GCCUCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 28041 0.68 0.914293
Target:  5'- gGCuCUcggaGGCGGGCAUcuGCGaGGGCGGg -3'
miRNA:   3'- aCG-GA----CCGUCUGUAauUGC-CUCGCCg -5'
3575 5' -54.4 NC_001650.1 + 29203 0.67 0.935911
Target:  5'- gGUCUGGaucuuggggguCAGGCAgugGAUGGuGGUGGCg -3'
miRNA:   3'- aCGGACC-----------GUCUGUaa-UUGCC-UCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 30436 0.7 0.827381
Target:  5'- cGCUcGGCgAGACggUGGCcuuucuGGGGCGGCu -3'
miRNA:   3'- aCGGaCCG-UCUGuaAUUG------CCUCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 30686 0.68 0.902044
Target:  5'- cGCCgcggGGCGaGCGggAGgGGGGCGGg -3'
miRNA:   3'- aCGGa---CCGUcUGUaaUUgCCUCGCCg -5'
3575 5' -54.4 NC_001650.1 + 30769 0.77 0.427866
Target:  5'- aGCCgagagacgGGCAGggggacGCGgggGACGGGGCGGCg -3'
miRNA:   3'- aCGGa-------CCGUC------UGUaa-UUGCCUCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 30917 0.71 0.773591
Target:  5'- gGCC--GCGGACAggGGCGGGGUcguGGCa -3'
miRNA:   3'- aCGGacCGUCUGUaaUUGCCUCG---CCG- -5'
3575 5' -54.4 NC_001650.1 + 31015 0.69 0.874751
Target:  5'- gGCCUGGCuGG----GGCGGGG-GGCg -3'
miRNA:   3'- aCGGACCGuCUguaaUUGCCUCgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.