miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3575 5' -54.4 NC_001650.1 + 1045 0.72 0.725183
Target:  5'- uUGCCaGGCAGACcccggGGgGGuGCGGUa -3'
miRNA:   3'- -ACGGaCCGUCUGuaa--UUgCCuCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 1423 0.71 0.754545
Target:  5'- uUGCCaGGCAGAUuagGUUAAUGuGGGgGGUg -3'
miRNA:   3'- -ACGGaCCGUCUG---UAAUUGC-CUCgCCG- -5'
3575 5' -54.4 NC_001650.1 + 1610 0.7 0.843965
Target:  5'- uUGCCgGGCAGaACAUgucaGugGGGGgGuGCa -3'
miRNA:   3'- -ACGGaCCGUC-UGUAa---UugCCUCgC-CG- -5'
3575 5' -54.4 NC_001650.1 + 1906 0.67 0.940714
Target:  5'- uUGCCaGGCAGGguUUAGaguggggGGuGCGGUa -3'
miRNA:   3'- -ACGGaCCGUCUguAAUUg------CCuCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 2479 0.67 0.930869
Target:  5'- uUGCCgGGCAGGguuCAgUGugGGGGgGuGCa -3'
miRNA:   3'- -ACGGaCCGUCU---GUaAUugCCUCgC-CG- -5'
3575 5' -54.4 NC_001650.1 + 2622 0.71 0.792126
Target:  5'- uUGCCgGGCAGAUuu--AgGGAGUGGg -3'
miRNA:   3'- -ACGGaCCGUCUGuaauUgCCUCGCCg -5'
3575 5' -54.4 NC_001650.1 + 2766 0.71 0.792126
Target:  5'- uUGCCgGGCAGAUuu--AgGGAGUGGg -3'
miRNA:   3'- -ACGGaCCGUCUGuaauUgCCUCGCCg -5'
3575 5' -54.4 NC_001650.1 + 2916 0.67 0.945277
Target:  5'- gGCCcaggggGGCuGucCAUUAAUGGAGCaGCc -3'
miRNA:   3'- aCGGa-----CCGuCu-GUAAUUGCCUCGcCG- -5'
3575 5' -54.4 NC_001650.1 + 3054 0.67 0.930869
Target:  5'- uUGCCaGGCAGGuuUUaGAUGGGGgGGUg -3'
miRNA:   3'- -ACGGaCCGUCUguAA-UUGCCUCgCCG- -5'
3575 5' -54.4 NC_001650.1 + 3156 0.69 0.874751
Target:  5'- uUGCUaGGCAgGAUAggAGgGGAGgGGCu -3'
miRNA:   3'- -ACGGaCCGU-CUGUaaUUgCCUCgCCG- -5'
3575 5' -54.4 NC_001650.1 + 3201 0.72 0.694079
Target:  5'- aUGCCUGGCAGGCuaaguccAUUGGCucuuagGGAGCacgugggacuguGGCg -3'
miRNA:   3'- -ACGGACCGUCUG-------UAAUUG------CCUCG------------CCG- -5'
3575 5' -54.4 NC_001650.1 + 3270 0.76 0.482376
Target:  5'- aUGCCUGGCAGGCugcucccAUUGGcCGGuAGgGGCc -3'
miRNA:   3'- -ACGGACCGUCUG-------UAAUU-GCC-UCgCCG- -5'
3575 5' -54.4 NC_001650.1 + 3877 0.69 0.881915
Target:  5'- gGCCaaUGGCAGAgcgggacgccCcgUGACGGGGaCGGg -3'
miRNA:   3'- aCGG--ACCGUCU----------GuaAUUGCCUC-GCCg -5'
3575 5' -54.4 NC_001650.1 + 3928 0.85 0.171133
Target:  5'- gUGCCUGGCAGGCAUUuagAACauGGCGGCg -3'
miRNA:   3'- -ACGGACCGUCUGUAA---UUGccUCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 4137 1.13 0.002531
Target:  5'- aUGCCUGGCAGACAUUAACGGAGCGGCg -3'
miRNA:   3'- -ACGGACCGUCUGUAAUUGCCUCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 4243 0.66 0.951679
Target:  5'- aUGCCUGGCAGGCcgaGUUccccauuucuggccAAUGGGGacucuguccgugGGCg -3'
miRNA:   3'- -ACGGACCGUCUG---UAA--------------UUGCCUCg-----------CCG- -5'
3575 5' -54.4 NC_001650.1 + 5258 0.69 0.851178
Target:  5'- aUGCCUGGCAGGCGgccaucuUGGAuccccauGCcuGGCa -3'
miRNA:   3'- -ACGGACCGUCUGUaauu---GCCU-------CG--CCG- -5'
3575 5' -54.4 NC_001650.1 + 5322 0.66 0.961195
Target:  5'- gGCUguggGGCGGccACGUgGugGGgaGGCGGCc -3'
miRNA:   3'- aCGGa---CCGUC--UGUAaUugCC--UCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 5367 0.71 0.773591
Target:  5'- uUGCUaGGCAGAUua-GGC-GAGCGGCg -3'
miRNA:   3'- -ACGGaCCGUCUGuaaUUGcCUCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 6328 0.69 0.867369
Target:  5'- uUGCUaGGCAGAauaaGgaAAUGGGGCGGg -3'
miRNA:   3'- -ACGGaCCGUCUg---UaaUUGCCUCGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.