Results 1 - 20 of 156 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3575 | 5' | -54.4 | NC_001650.1 | + | 184126 | 0.66 | 0.96461 |
Target: 5'- -cCCUGGCGGcCAUcuuu-GAGCGGCc -3' miRNA: 3'- acGGACCGUCuGUAauugcCUCGCCG- -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 183448 | 0.69 | 0.874751 |
Target: 5'- gGCCaucuuggugGGguGGCAUcuUggUGGGGUGGCc -3' miRNA: 3'- aCGGa--------CCguCUGUA--AuuGCCUCGCCG- -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 175567 | 0.68 | 0.92006 |
Target: 5'- cGCCcccucGCGGACGcu-GCcugGGAGCGGCg -3' miRNA: 3'- aCGGac---CGUCUGUaauUG---CCUCGCCG- -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 175050 | 0.7 | 0.835766 |
Target: 5'- cGCCaaGCAGACugaaGGCGGGGUugGGCa -3' miRNA: 3'- aCGGacCGUCUGuaa-UUGCCUCG--CCG- -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 174596 | 0.82 | 0.254398 |
Target: 5'- uUGCCUGGCAGAC--UAAgGGGGUGGg -3' miRNA: 3'- -ACGGACCGUCUGuaAUUgCCUCGCCg -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 173035 | 0.69 | 0.867369 |
Target: 5'- uUGCUaGGCAGAauaaGgaAAUGGGGCGGg -3' miRNA: 3'- -ACGGaCCGUCUg---UaaUUGCCUCGCCg -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 172074 | 0.71 | 0.773591 |
Target: 5'- uUGCUaGGCAGAUua-GGC-GAGCGGCg -3' miRNA: 3'- -ACGGaCCGUCUGuaaUUGcCUCGCCG- -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 172029 | 0.66 | 0.961195 |
Target: 5'- gGCUguggGGCGGccACGUgGugGGgaGGCGGCc -3' miRNA: 3'- aCGGa---CCGUC--UGUAaUugCC--UCGCCG- -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 171965 | 0.69 | 0.851178 |
Target: 5'- aUGCCUGGCAGGCGgccaucuUGGAuccccauGCcuGGCa -3' miRNA: 3'- -ACGGACCGUCUGUaauu---GCCU-------CG--CCG- -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 170950 | 0.66 | 0.951679 |
Target: 5'- aUGCCUGGCAGGCcgaGUUccccauuucuggccAAUGGGGacucuguccgugGGCg -3' miRNA: 3'- -ACGGACCGUCUG---UAA--------------UUGCCUCg-----------CCG- -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 170844 | 1.13 | 0.002531 |
Target: 5'- aUGCCUGGCAGACAUUAACGGAGCGGCg -3' miRNA: 3'- -ACGGACCGUCUGUAAUUGCCUCGCCG- -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 170635 | 0.85 | 0.171133 |
Target: 5'- gUGCCUGGCAGGCAUUuagAACauGGCGGCg -3' miRNA: 3'- -ACGGACCGUCUGUAA---UUGccUCGCCG- -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 170584 | 0.69 | 0.881915 |
Target: 5'- gGCCaaUGGCAGAgcgggacgccCcgUGACGGGGaCGGg -3' miRNA: 3'- aCGG--ACCGUCU----------GuaAUUGCCUC-GCCg -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 169977 | 0.76 | 0.482376 |
Target: 5'- aUGCCUGGCAGGCugcucccAUUGGcCGGuAGgGGCc -3' miRNA: 3'- -ACGGACCGUCUG-------UAAUU-GCC-UCgCCG- -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 169908 | 0.72 | 0.694079 |
Target: 5'- aUGCCUGGCAGGCuaaguccAUUGGCucuuagGGAGCacgugggacuguGGCg -3' miRNA: 3'- -ACGGACCGUCUG-------UAAUUG------CCUCG------------CCG- -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 169863 | 0.69 | 0.874751 |
Target: 5'- uUGCUaGGCAgGAUAggAGgGGAGgGGCu -3' miRNA: 3'- -ACGGaCCGU-CUGUaaUUgCCUCgCCG- -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 169761 | 0.67 | 0.930869 |
Target: 5'- uUGCCaGGCAGGuuUUaGAUGGGGgGGUg -3' miRNA: 3'- -ACGGaCCGUCUguAA-UUGCCUCgCCG- -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 169623 | 0.67 | 0.945277 |
Target: 5'- gGCCcaggggGGCuGucCAUUAAUGGAGCaGCc -3' miRNA: 3'- aCGGa-----CCGuCu-GUAAUUGCCUCGcCG- -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 169472 | 0.68 | 0.92006 |
Target: 5'- uUGCCgGGCAGAUuug---GGAGUGGg -3' miRNA: 3'- -ACGGaCCGUCUGuaauugCCUCGCCg -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 169329 | 0.71 | 0.792126 |
Target: 5'- uUGCCgGGCAGAUuu--AgGGAGUGGg -3' miRNA: 3'- -ACGGaCCGUCUGuaauUgCCUCGCCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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