miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3575 5' -54.4 NC_001650.1 + 4137 1.13 0.002531
Target:  5'- aUGCCUGGCAGACAUUAACGGAGCGGCg -3'
miRNA:   3'- -ACGGACCGUCUGUAAUUGCCUCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 170844 1.13 0.002531
Target:  5'- aUGCCUGGCAGACAUUAACGGAGCGGCg -3'
miRNA:   3'- -ACGGACCGUCUGUAAUUGCCUCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 170635 0.85 0.171133
Target:  5'- gUGCCUGGCAGGCAUUuagAACauGGCGGCg -3'
miRNA:   3'- -ACGGACCGUCUGUAA---UUGccUCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 3928 0.85 0.171133
Target:  5'- gUGCCUGGCAGGCAUUuagAACauGGCGGCg -3'
miRNA:   3'- -ACGGACCGUCUGUAA---UUGccUCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 174596 0.82 0.254398
Target:  5'- uUGCCUGGCAGAC--UAAgGGGGUGGg -3'
miRNA:   3'- -ACGGACCGUCUGuaAUUgCCUCGCCg -5'
3575 5' -54.4 NC_001650.1 + 7889 0.82 0.254398
Target:  5'- uUGCCUGGCAGAC--UAAgGGGGUGGg -3'
miRNA:   3'- -ACGGACCGUCUGuaAUUgCCUCGCCg -5'
3575 5' -54.4 NC_001650.1 + 51302 0.78 0.418991
Target:  5'- gGCCcaagGGCGGGCAc--GCGGAGCuGGCg -3'
miRNA:   3'- aCGGa---CCGUCUGUaauUGCCUCG-CCG- -5'
3575 5' -54.4 NC_001650.1 + 30769 0.77 0.427866
Target:  5'- aGCCgagagacgGGCAGggggacGCGgggGACGGGGCGGCg -3'
miRNA:   3'- aCGGa-------CCGUC------UGUaa-UUGCCUCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 89157 0.77 0.474783
Target:  5'- cGCCUGGCGGACAggguccugugccCGGGGCuccggGGCg -3'
miRNA:   3'- aCGGACCGUCUGUaauu--------GCCUCG-----CCG- -5'
3575 5' -54.4 NC_001650.1 + 3270 0.76 0.482376
Target:  5'- aUGCCUGGCAGGCugcucccAUUGGcCGGuAGgGGCc -3'
miRNA:   3'- -ACGGACCGUCUG-------UAAUU-GCC-UCgCCG- -5'
3575 5' -54.4 NC_001650.1 + 169977 0.76 0.482376
Target:  5'- aUGCCUGGCAGGCugcucccAUUGGcCGGuAGgGGCc -3'
miRNA:   3'- -ACGGACCGUCUG-------UAAUU-GCC-UCgCCG- -5'
3575 5' -54.4 NC_001650.1 + 121201 0.76 0.522158
Target:  5'- cGCCcGGCGGACggUGGaggccuuccUGGAGCGGUg -3'
miRNA:   3'- aCGGaCCGUCUGuaAUU---------GCCUCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 61557 0.74 0.602892
Target:  5'- gGCCagggucaaGGCGGGCAUgcugagGGCGGAGCugGGCa -3'
miRNA:   3'- aCGGa-------CCGUCUGUAa-----UUGCCUCG--CCG- -5'
3575 5' -54.4 NC_001650.1 + 89204 0.74 0.62343
Target:  5'- cGUgaGGCGGGCcagGGCGG-GCGGCg -3'
miRNA:   3'- aCGgaCCGUCUGuaaUUGCCuCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 136732 0.73 0.67475
Target:  5'- cGuCUUGGCGGugGgg-GCGGuGGCGGCg -3'
miRNA:   3'- aC-GGACCGUCugUaauUGCC-UCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 122845 0.73 0.684943
Target:  5'- aGUCUGGCucuGACAgguccagcugGACGGGGUGGg -3'
miRNA:   3'- aCGGACCGu--CUGUaa--------UUGCCUCGCCg -5'
3575 5' -54.4 NC_001650.1 + 3201 0.72 0.694079
Target:  5'- aUGCCUGGCAGGCuaaguccAUUGGCucuuagGGAGCacgugggacuguGGCg -3'
miRNA:   3'- -ACGGACCGUCUG-------UAAUUG------CCUCG------------CCG- -5'
3575 5' -54.4 NC_001650.1 + 169908 0.72 0.694079
Target:  5'- aUGCCUGGCAGGCuaaguccAUUGGCucuuagGGAGCacgugggacuguGGCg -3'
miRNA:   3'- -ACGGACCGUCUG-------UAAUUG------CCUCG------------CCG- -5'
3575 5' -54.4 NC_001650.1 + 132047 0.72 0.695092
Target:  5'- gGCUUGGguGACGUcGGCGGc-CGGCc -3'
miRNA:   3'- aCGGACCguCUGUAaUUGCCucGCCG- -5'
3575 5' -54.4 NC_001650.1 + 69158 0.72 0.695092
Target:  5'- gGCCgGGCAGGgugguagcCAgggAGgGGGGCGGCg -3'
miRNA:   3'- aCGGaCCGUCU--------GUaa-UUgCCUCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.