miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3575 5' -54.4 NC_001650.1 + 68538 0.7 0.810079
Target:  5'- aGCC-GGgGGAUGUccaUGACGGuGCGGUa -3'
miRNA:   3'- aCGGaCCgUCUGUA---AUUGCCuCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 109115 0.71 0.754545
Target:  5'- cGuCCUGGgGGAgGUgGACGaGGCGGCg -3'
miRNA:   3'- aC-GGACCgUCUgUAaUUGCcUCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 164408 0.71 0.754545
Target:  5'- aGCCUGaG-AGACAggcGCGGGGCGuGCu -3'
miRNA:   3'- aCGGAC-CgUCUGUaauUGCCUCGC-CG- -5'
3575 5' -54.4 NC_001650.1 + 57495 0.71 0.764127
Target:  5'- gGCC-GGguGAUAgaaggccugUGGCGGGGCGGg -3'
miRNA:   3'- aCGGaCCguCUGUa--------AUUGCCUCGCCg -5'
3575 5' -54.4 NC_001650.1 + 75067 0.71 0.764127
Target:  5'- cGCCUGGCucgcguccugAGACcccgggAGCGGAGCGa- -3'
miRNA:   3'- aCGGACCG----------UCUGuaa---UUGCCUCGCcg -5'
3575 5' -54.4 NC_001650.1 + 30917 0.71 0.773591
Target:  5'- gGCC--GCGGACAggGGCGGGGUcguGGCa -3'
miRNA:   3'- aCGGacCGUCUGUaaUUGCCUCG---CCG- -5'
3575 5' -54.4 NC_001650.1 + 135942 0.7 0.80118
Target:  5'- aGCCUgagguggggGGCAGGCAcgGACaGAGgGGUg -3'
miRNA:   3'- aCGGA---------CCGUCUGUaaUUGcCUCgCCG- -5'
3575 5' -54.4 NC_001650.1 + 122122 0.7 0.809196
Target:  5'- gGCCagGGCGGGgucggcuCGggGGCgGGGGCGGCg -3'
miRNA:   3'- aCGGa-CCGUCU-------GUaaUUG-CCUCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 52796 0.7 0.810079
Target:  5'- gGCCcucggGGCccGGGCGcagGACGGGcGCGGCg -3'
miRNA:   3'- aCGGa----CCG--UCUGUaa-UUGCCU-CGCCG- -5'
3575 5' -54.4 NC_001650.1 + 121784 0.72 0.744854
Target:  5'- cGCCcGGCGG-CGggggUAACggggaaggggGGAGCGGCg -3'
miRNA:   3'- aCGGaCCGUCuGUa---AUUG----------CCUCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 25006 0.72 0.744854
Target:  5'- gUGCCUGGaCAGGCuggUGGCcucGGgccaGGCGGCc -3'
miRNA:   3'- -ACGGACC-GUCUGua-AUUG---CC----UCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 124090 0.72 0.715221
Target:  5'- gUGUCagaGGCcGACGggGGCGGAGCGuGCa -3'
miRNA:   3'- -ACGGa--CCGuCUGUaaUUGCCUCGC-CG- -5'
3575 5' -54.4 NC_001650.1 + 30769 0.77 0.427866
Target:  5'- aGCCgagagacgGGCAGggggacGCGgggGACGGGGCGGCg -3'
miRNA:   3'- aCGGa-------CCGUC------UGUaa-UUGCCUCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 89157 0.77 0.474783
Target:  5'- cGCCUGGCGGACAggguccugugccCGGGGCuccggGGCg -3'
miRNA:   3'- aCGGACCGUCUGUaauu--------GCCUCG-----CCG- -5'
3575 5' -54.4 NC_001650.1 + 3270 0.76 0.482376
Target:  5'- aUGCCUGGCAGGCugcucccAUUGGcCGGuAGgGGCc -3'
miRNA:   3'- -ACGGACCGUCUG-------UAAUU-GCC-UCgCCG- -5'
3575 5' -54.4 NC_001650.1 + 169977 0.76 0.482376
Target:  5'- aUGCCUGGCAGGCugcucccAUUGGcCGGuAGgGGCc -3'
miRNA:   3'- -ACGGACCGUCUG-------UAAUU-GCC-UCgCCG- -5'
3575 5' -54.4 NC_001650.1 + 121201 0.76 0.522158
Target:  5'- cGCCcGGCGGACggUGGaggccuuccUGGAGCGGUg -3'
miRNA:   3'- aCGGaCCGUCUGuaAUU---------GCCUCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 89204 0.74 0.62343
Target:  5'- cGUgaGGCGGGCcagGGCGG-GCGGCg -3'
miRNA:   3'- aCGgaCCGUCUGuaaUUGCCuCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 3201 0.72 0.694079
Target:  5'- aUGCCUGGCAGGCuaaguccAUUGGCucuuagGGAGCacgugggacuguGGCg -3'
miRNA:   3'- -ACGGACCGUCUG-------UAAUUG------CCUCG------------CCG- -5'
3575 5' -54.4 NC_001650.1 + 169908 0.72 0.694079
Target:  5'- aUGCCUGGCAGGCuaaguccAUUGGCucuuagGGAGCacgugggacuguGGCg -3'
miRNA:   3'- -ACGGACCGUCUG-------UAAUUG------CCUCG------------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.