Results 1 - 20 of 156 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3575 | 5' | -54.4 | NC_001650.1 | + | 170844 | 1.13 | 0.002531 |
Target: 5'- aUGCCUGGCAGACAUUAACGGAGCGGCg -3' miRNA: 3'- -ACGGACCGUCUGUAAUUGCCUCGCCG- -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 172074 | 0.71 | 0.773591 |
Target: 5'- uUGCUaGGCAGAUua-GGC-GAGCGGCg -3' miRNA: 3'- -ACGGaCCGUCUGuaaUUGcCUCGCCG- -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 169329 | 0.71 | 0.792126 |
Target: 5'- uUGCCgGGCAGAUuu--AgGGAGUGGg -3' miRNA: 3'- -ACGGaCCGUCUGuaauUgCCUCGCCg -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 17419 | 0.66 | 0.96461 |
Target: 5'- -cCCUGGCGGcCAUcuuu-GAGCGGCc -3' miRNA: 3'- acGGACCGUCuGUAauugcCUCGCCG- -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 174596 | 0.82 | 0.254398 |
Target: 5'- uUGCCUGGCAGAC--UAAgGGGGUGGg -3' miRNA: 3'- -ACGGACCGUCUGuaAUUgCCUCGCCg -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 7889 | 0.82 | 0.254398 |
Target: 5'- uUGCCUGGCAGAC--UAAgGGGGUGGg -3' miRNA: 3'- -ACGGACCGUCUGuaAUUgCCUCGCCg -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 136732 | 0.73 | 0.67475 |
Target: 5'- cGuCUUGGCGGugGgg-GCGGuGGCGGCg -3' miRNA: 3'- aC-GGACCGUCugUaauUGCC-UCGCCG- -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 122845 | 0.73 | 0.684943 |
Target: 5'- aGUCUGGCucuGACAgguccagcugGACGGGGUGGg -3' miRNA: 3'- aCGGACCGu--CUGUaa--------UUGCCUCGCCg -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 69070 | 0.72 | 0.705187 |
Target: 5'- gUGUCUGGCGGcCAUgggccCGGGcgcGCGGCa -3' miRNA: 3'- -ACGGACCGUCuGUAauu--GCCU---CGCCG- -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 56606 | 0.71 | 0.754545 |
Target: 5'- cUGCCUaGCGGGgAagAGCGaGGGCGGCc -3' miRNA: 3'- -ACGGAcCGUCUgUaaUUGC-CUCGCCG- -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 1045 | 0.72 | 0.725183 |
Target: 5'- uUGCCaGGCAGACcccggGGgGGuGCGGUa -3' miRNA: 3'- -ACGGaCCGUCUGuaa--UUgCCuCGCCG- -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 69158 | 0.72 | 0.695092 |
Target: 5'- gGCCgGGCAGGgugguagcCAgggAGgGGGGCGGCg -3' miRNA: 3'- aCGGaCCGUCU--------GUaa-UUgCCUCGCCG- -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 4137 | 1.13 | 0.002531 |
Target: 5'- aUGCCUGGCAGACAUUAACGGAGCGGCg -3' miRNA: 3'- -ACGGACCGUCUGUAAUUGCCUCGCCG- -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 168130 | 0.71 | 0.754545 |
Target: 5'- uUGCCaGGCAGAUuagGUUAAUGuGGGgGGUg -3' miRNA: 3'- -ACGGaCCGUCUG---UAAUUGC-CUCgCCG- -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 170635 | 0.85 | 0.171133 |
Target: 5'- gUGCCUGGCAGGCAUUuagAACauGGCGGCg -3' miRNA: 3'- -ACGGACCGUCUGUAA---UUGccUCGCCG- -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 132047 | 0.72 | 0.695092 |
Target: 5'- gGCUUGGguGACGUcGGCGGc-CGGCc -3' miRNA: 3'- aCGGACCguCUGUAaUUGCCucGCCG- -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 1423 | 0.71 | 0.754545 |
Target: 5'- uUGCCaGGCAGAUuagGUUAAUGuGGGgGGUg -3' miRNA: 3'- -ACGGaCCGUCUG---UAAUUGC-CUCgCCG- -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 5367 | 0.71 | 0.773591 |
Target: 5'- uUGCUaGGCAGAUua-GGC-GAGCGGCg -3' miRNA: 3'- -ACGGaCCGUCUGuaaUUGcCUCGCCG- -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 3928 | 0.85 | 0.171133 |
Target: 5'- gUGCCUGGCAGGCAUUuagAACauGGCGGCg -3' miRNA: 3'- -ACGGACCGUCUGUAA---UUGccUCGCCG- -5' |
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3575 | 5' | -54.4 | NC_001650.1 | + | 61557 | 0.74 | 0.602892 |
Target: 5'- gGCCagggucaaGGCGGGCAUgcugagGGCGGAGCugGGCa -3' miRNA: 3'- aCGGa-------CCGUCUGUAa-----UUGCCUCG--CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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