miRNA display CGI


Results 21 - 40 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3575 5' -54.4 NC_001650.1 + 69070 0.72 0.705187
Target:  5'- gUGUCUGGCGGcCAUgggccCGGGcgcGCGGCa -3'
miRNA:   3'- -ACGGACCGUCuGUAauu--GCCU---CGCCG- -5'
3575 5' -54.4 NC_001650.1 + 124090 0.72 0.715221
Target:  5'- gUGUCagaGGCcGACGggGGCGGAGCGuGCa -3'
miRNA:   3'- -ACGGa--CCGuCUGUaaUUGCCUCGC-CG- -5'
3575 5' -54.4 NC_001650.1 + 1045 0.72 0.725183
Target:  5'- uUGCCaGGCAGACcccggGGgGGuGCGGUa -3'
miRNA:   3'- -ACGGaCCGUCUGuaa--UUgCCuCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 167752 0.72 0.725183
Target:  5'- uUGCCaGGCAGACcccggGGgGGuGCGGUa -3'
miRNA:   3'- -ACGGaCCGUCUGuaa--UUgCCuCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 121784 0.72 0.744854
Target:  5'- cGCCcGGCGG-CGggggUAACggggaaggggGGAGCGGCg -3'
miRNA:   3'- aCGGaCCGUCuGUa---AUUG----------CCUCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 25006 0.72 0.744854
Target:  5'- gUGCCUGGaCAGGCuggUGGCcucGGgccaGGCGGCc -3'
miRNA:   3'- -ACGGACC-GUCUGua-AUUG---CC----UCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 168130 0.71 0.754545
Target:  5'- uUGCCaGGCAGAUuagGUUAAUGuGGGgGGUg -3'
miRNA:   3'- -ACGGaCCGUCUG---UAAUUGC-CUCgCCG- -5'
3575 5' -54.4 NC_001650.1 + 56606 0.71 0.754545
Target:  5'- cUGCCUaGCGGGgAagAGCGaGGGCGGCc -3'
miRNA:   3'- -ACGGAcCGUCUgUaaUUGC-CUCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 1423 0.71 0.754545
Target:  5'- uUGCCaGGCAGAUuagGUUAAUGuGGGgGGUg -3'
miRNA:   3'- -ACGGaCCGUCUG---UAAUUGC-CUCgCCG- -5'
3575 5' -54.4 NC_001650.1 + 109115 0.71 0.754545
Target:  5'- cGuCCUGGgGGAgGUgGACGaGGCGGCg -3'
miRNA:   3'- aC-GGACCgUCUgUAaUUGCcUCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 164408 0.71 0.754545
Target:  5'- aGCCUGaG-AGACAggcGCGGGGCGuGCu -3'
miRNA:   3'- aCGGAC-CgUCUGUaauUGCCUCGC-CG- -5'
3575 5' -54.4 NC_001650.1 + 57495 0.71 0.764127
Target:  5'- gGCC-GGguGAUAgaaggccugUGGCGGGGCGGg -3'
miRNA:   3'- aCGGaCCguCUGUa--------AUUGCCUCGCCg -5'
3575 5' -54.4 NC_001650.1 + 75067 0.71 0.764127
Target:  5'- cGCCUGGCucgcguccugAGACcccgggAGCGGAGCGa- -3'
miRNA:   3'- aCGGACCG----------UCUGuaa---UUGCCUCGCcg -5'
3575 5' -54.4 NC_001650.1 + 30917 0.71 0.773591
Target:  5'- gGCC--GCGGACAggGGCGGGGUcguGGCa -3'
miRNA:   3'- aCGGacCGUCUGUaaUUGCCUCG---CCG- -5'
3575 5' -54.4 NC_001650.1 + 172074 0.71 0.773591
Target:  5'- uUGCUaGGCAGAUua-GGC-GAGCGGCg -3'
miRNA:   3'- -ACGGaCCGUCUGuaaUUGcCUCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 5367 0.71 0.773591
Target:  5'- uUGCUaGGCAGAUua-GGC-GAGCGGCg -3'
miRNA:   3'- -ACGGaCCGUCUGuaaUUGcCUCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 2622 0.71 0.792126
Target:  5'- uUGCCgGGCAGAUuu--AgGGAGUGGg -3'
miRNA:   3'- -ACGGaCCGUCUGuaauUgCCUCGCCg -5'
3575 5' -54.4 NC_001650.1 + 58410 0.71 0.792126
Target:  5'- aGaCgaGGUAGACucugcuCGGGGCGGCg -3'
miRNA:   3'- aC-GgaCCGUCUGuaauu-GCCUCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 2766 0.71 0.792126
Target:  5'- uUGCCgGGCAGAUuu--AgGGAGUGGg -3'
miRNA:   3'- -ACGGaCCGUCUGuaauUgCCUCGCCg -5'
3575 5' -54.4 NC_001650.1 + 169329 0.71 0.792126
Target:  5'- uUGCCgGGCAGAUuu--AgGGAGUGGg -3'
miRNA:   3'- -ACGGaCCGUCUGuaauUgCCUCGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.