miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3577 3' -59.3 NC_001650.1 + 11121 0.66 0.825099
Target:  5'- uGUUGguGGUGGAGGGUGgUg-GUGGUCu -3'
miRNA:   3'- -CGAC--CCACCUCCCAUgGagCGCCAGu -5'
3577 3' -59.3 NC_001650.1 + 177828 0.66 0.825099
Target:  5'- uGUUGguGGUGGAGGGUGgUg-GUGGUCu -3'
miRNA:   3'- -CGAC--CCACCUCCCAUgGagCGCCAGu -5'
3577 3' -59.3 NC_001650.1 + 102477 0.66 0.825099
Target:  5'- cGCccagGaGGUGGc-GGUACCcacCGCGGUCAu -3'
miRNA:   3'- -CGa---C-CCACCucCCAUGGa--GCGCCAGU- -5'
3577 3' -59.3 NC_001650.1 + 155454 0.66 0.820171
Target:  5'- uGCUGGGcguacgggacgcaccUGGGGgucaGGUACCgCGCGGaCGg -3'
miRNA:   3'- -CGACCC---------------ACCUC----CCAUGGaGCGCCaGU- -5'
3577 3' -59.3 NC_001650.1 + 1651 0.67 0.791214
Target:  5'- -aUGGGagccGGGGGGccgGCCUUGUGGUg- -3'
miRNA:   3'- cgACCCa---CCUCCCa--UGGAGCGCCAgu -5'
3577 3' -59.3 NC_001650.1 + 168358 0.67 0.791214
Target:  5'- -aUGGGagccGGGGGGccgGCCUUGUGGUg- -3'
miRNA:   3'- cgACCCa---CCUCCCa--UGGAGCGCCAgu -5'
3577 3' -59.3 NC_001650.1 + 134372 0.67 0.791214
Target:  5'- cGCgUGG--GGAGGGccGCC-CGCGGUCGc -3'
miRNA:   3'- -CG-ACCcaCCUCCCa-UGGaGCGCCAGU- -5'
3577 3' -59.3 NC_001650.1 + 158116 0.67 0.791214
Target:  5'- aGCUGGGgcuggcccaUGGAGGuUGCUUCGCuGUgCAg -3'
miRNA:   3'- -CGACCC---------ACCUCCcAUGGAGCGcCA-GU- -5'
3577 3' -59.3 NC_001650.1 + 59644 0.67 0.791214
Target:  5'- cCUGaGGcUGGAGGGgucCUUCGCGGa-- -3'
miRNA:   3'- cGAC-CC-ACCUCCCau-GGAGCGCCagu -5'
3577 3' -59.3 NC_001650.1 + 147675 0.67 0.773445
Target:  5'- gGCcGGGagccgcucUGGGGGGUACCugcUCGgGGUgAg -3'
miRNA:   3'- -CGaCCC--------ACCUCCCAUGG---AGCgCCAgU- -5'
3577 3' -59.3 NC_001650.1 + 73460 0.67 0.773445
Target:  5'- gGCUGGuGUuGAGGGUgGCCagcUCGUGGUgGa -3'
miRNA:   3'- -CGACC-CAcCUCCCA-UGG---AGCGCCAgU- -5'
3577 3' -59.3 NC_001650.1 + 121569 0.67 0.764381
Target:  5'- aGCauGGUGGAgaaGGGUggcagGCCUCGCGGg-- -3'
miRNA:   3'- -CGacCCACCU---CCCA-----UGGAGCGCCagu -5'
3577 3' -59.3 NC_001650.1 + 130272 0.68 0.736569
Target:  5'- cCUGGaGUcGAGGGccaagACCUCGCGGg-- -3'
miRNA:   3'- cGACC-CAcCUCCCa----UGGAGCGCCagu -5'
3577 3' -59.3 NC_001650.1 + 67682 0.68 0.717593
Target:  5'- aGC-GGGaGGGGGGaauUCUgGCGGUCAg -3'
miRNA:   3'- -CGaCCCaCCUCCCau-GGAgCGCCAGU- -5'
3577 3' -59.3 NC_001650.1 + 147738 0.68 0.685722
Target:  5'- cGCUuuuGGUGGGGGGUGCCUgguuuugggggaccCGUGGa-- -3'
miRNA:   3'- -CGAc--CCACCUCCCAUGGA--------------GCGCCagu -5'
3577 3' -59.3 NC_001650.1 + 88713 0.69 0.678894
Target:  5'- aGCgGGGgcgGGAGGGggcuCCUCGgGGa-- -3'
miRNA:   3'- -CGaCCCa--CCUCCCau--GGAGCgCCagu -5'
3577 3' -59.3 NC_001650.1 + 94624 0.69 0.649468
Target:  5'- uGUUGGGUGGuauGGGcgccGCCUCaGCGcGUCc -3'
miRNA:   3'- -CGACCCACCu--CCCa---UGGAG-CGC-CAGu -5'
3577 3' -59.3 NC_001650.1 + 118012 0.69 0.639624
Target:  5'- gGCgaGGG-GGAGGGUGCCggggcaGCGGg-- -3'
miRNA:   3'- -CGa-CCCaCCUCCCAUGGag----CGCCagu -5'
3577 3' -59.3 NC_001650.1 + 71097 0.69 0.639624
Target:  5'- --aGGGUGGGGGacaagACCaUCGCGGUgGa -3'
miRNA:   3'- cgaCCCACCUCCca---UGG-AGCGCCAgU- -5'
3577 3' -59.3 NC_001650.1 + 178345 0.7 0.580685
Target:  5'- aGUUGGGUGGGcuGGGUGgCgCGCGG-CGa -3'
miRNA:   3'- -CGACCCACCU--CCCAUgGaGCGCCaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.