Results 21 - 40 of 280 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3577 | 5' | -53.1 | NC_001650.1 | + | 86343 | 0.66 | 0.986393 |
Target: 5'- ---aGCCUcagcccgaggugAAGACCaCCCCcu-ACCCCa -3' miRNA: 3'- guaaUGGA------------UUCUGG-GGGGuacUGGGG- -5' |
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3577 | 5' | -53.1 | NC_001650.1 | + | 27068 | 0.66 | 0.980774 |
Target: 5'- --gUACCUcuucGAGGCCCacuacaCCAgccUGGCCCa -3' miRNA: 3'- guaAUGGA----UUCUGGGg-----GGU---ACUGGGg -5' |
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3577 | 5' | -53.1 | NC_001650.1 | + | 166832 | 0.66 | 0.97991 |
Target: 5'- --gUGCuCUAAGuCCUCCCuaacccuaaucgGACCCCc -3' miRNA: 3'- guaAUG-GAUUCuGGGGGGua----------CUGGGG- -5' |
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3577 | 5' | -53.1 | NC_001650.1 | + | 14374 | 0.66 | 0.986229 |
Target: 5'- ----cCCUGAacacguuGGCCCCCCuUGACCa- -3' miRNA: 3'- guaauGGAUU-------CUGGGGGGuACUGGgg -5' |
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3577 | 5' | -53.1 | NC_001650.1 | + | 16148 | 0.66 | 0.984682 |
Target: 5'- ---cACUgagAAGGCCUgCCCAcUGACCUCa -3' miRNA: 3'- guaaUGGa--UUCUGGG-GGGU-ACUGGGG- -5' |
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3577 | 5' | -53.1 | NC_001650.1 | + | 114142 | 0.66 | 0.978561 |
Target: 5'- --cUACCUGu-GCCCCCCGU-ACgCCa -3' miRNA: 3'- guaAUGGAUucUGGGGGGUAcUGgGG- -5' |
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3577 | 5' | -53.1 | NC_001650.1 | + | 140027 | 0.66 | 0.980561 |
Target: 5'- ---gGCCUAgcuuuuuGGACCCCC--UGGCCUa -3' miRNA: 3'- guaaUGGAU-------UCUGGGGGguACUGGGg -5' |
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3577 | 5' | -53.1 | NC_001650.1 | + | 130961 | 0.66 | 0.982812 |
Target: 5'- --cUACCU-GGACUCCCagaGGCCCg -3' miRNA: 3'- guaAUGGAuUCUGGGGGguaCUGGGg -5' |
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3577 | 5' | -53.1 | NC_001650.1 | + | 1824 | 0.66 | 0.982812 |
Target: 5'- --gUACUgc--ACCCCCCAcUGAUCCUa -3' miRNA: 3'- guaAUGGauucUGGGGGGU-ACUGGGG- -5' |
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3577 | 5' | -53.1 | NC_001650.1 | + | 168662 | 0.66 | 0.980774 |
Target: 5'- --aUACUgc--ACCCCCCAcUGAUCCUa -3' miRNA: 3'- guaAUGGauucUGGGGGGU-ACUGGGG- -5' |
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3577 | 5' | -53.1 | NC_001650.1 | + | 148282 | 0.66 | 0.980774 |
Target: 5'- ---cGCCUcuuuaAAGuACCCCCCGauGCCCa -3' miRNA: 3'- guaaUGGA-----UUC-UGGGGGGUacUGGGg -5' |
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3577 | 5' | -53.1 | NC_001650.1 | + | 54535 | 0.66 | 0.978561 |
Target: 5'- ---cACCgcucgcGACCCCCgGauuuugGACCCCu -3' miRNA: 3'- guaaUGGauu---CUGGGGGgUa-----CUGGGG- -5' |
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3577 | 5' | -53.1 | NC_001650.1 | + | 107073 | 0.66 | 0.980774 |
Target: 5'- ---gACCUGucauCCaCCCCGggcccGACCCCa -3' miRNA: 3'- guaaUGGAUucu-GG-GGGGUa----CUGGGG- -5' |
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3577 | 5' | -53.1 | NC_001650.1 | + | 56023 | 0.66 | 0.984682 |
Target: 5'- ---cACCcccaACUCCCC-UGGCCCCa -3' miRNA: 3'- guaaUGGauucUGGGGGGuACUGGGG- -5' |
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3577 | 5' | -53.1 | NC_001650.1 | + | 141239 | 0.66 | 0.982812 |
Target: 5'- ---aGCCcGGGGUCCCCCGguucgcccucGGCCCCg -3' miRNA: 3'- guaaUGGaUUCUGGGGGGUa---------CUGGGG- -5' |
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3577 | 5' | -53.1 | NC_001650.1 | + | 141011 | 0.66 | 0.985211 |
Target: 5'- ---gACgUAGGcagaagagcuacacGCCCCCCucugaccgccgguUGACCCCg -3' miRNA: 3'- guaaUGgAUUC--------------UGGGGGGu------------ACUGGGG- -5' |
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3577 | 5' | -53.1 | NC_001650.1 | + | 182855 | 0.66 | 0.984682 |
Target: 5'- ---cACUgagAAGGCCUgCCCAcUGACCUCa -3' miRNA: 3'- guaaUGGa--UUCUGGG-GGGU-ACUGGGG- -5' |
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3577 | 5' | -53.1 | NC_001650.1 | + | 1057 | 0.66 | 0.978561 |
Target: 5'- ---cGCUUAuguaaagcgguuGGGCCcaCCCCcgGGCCCCc -3' miRNA: 3'- guaaUGGAU------------UCUGG--GGGGuaCUGGGG- -5' |
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3577 | 5' | -53.1 | NC_001650.1 | + | 63078 | 0.66 | 0.978561 |
Target: 5'- --gUGCUccGGAgCCCCC-UGGCCUCu -3' miRNA: 3'- guaAUGGauUCUgGGGGGuACUGGGG- -5' |
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3577 | 5' | -53.1 | NC_001650.1 | + | 173381 | 0.66 | 0.980774 |
Target: 5'- uCAUUgGCCaugguAGuACCCCCUcgGcCCCCa -3' miRNA: 3'- -GUAA-UGGau---UC-UGGGGGGuaCuGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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