miRNA display CGI


Results 1 - 20 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3577 5' -53.1 NC_001650.1 + 23342 0.66 0.978561
Target:  5'- gCGUgggGCCccuGGACCUgCCCGUGGCCg- -3'
miRNA:   3'- -GUAa--UGGau-UCUGGG-GGGUACUGGgg -5'
3577 5' -53.1 NC_001650.1 + 1956 0.66 0.982812
Target:  5'- --gUACUgc--ACCCCCCAcUGAUCCUa -3'
miRNA:   3'- guaAUGGauucUGGGGGGU-ACUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 168531 0.66 0.982812
Target:  5'- --gUACUgc--ACCCCCCAcUGAUCCUa -3'
miRNA:   3'- guaAUGGauucUGGGGGGU-ACUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 141239 0.66 0.982812
Target:  5'- ---aGCCcGGGGUCCCCCGguucgcccucGGCCCCg -3'
miRNA:   3'- guaaUGGaUUCUGGGGGGUa---------CUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 3319 0.66 0.986393
Target:  5'- uGUUGCCaGGGGCCagaaUCCAauaUGGCCUCc -3'
miRNA:   3'- gUAAUGGaUUCUGGg---GGGU---ACUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 167764 0.66 0.978561
Target:  5'- ---cGCUUAuguaaagcgguuGGGCCcaCCCCcgGGCCCCc -3'
miRNA:   3'- guaaUGGAU------------UCUGG--GGGGuaCUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 6674 0.66 0.980774
Target:  5'- uCAUUgGCCaugguAGuACCCCCUcgGcCCCCa -3'
miRNA:   3'- -GUAA-UGGau---UC-UGGGGGGuaCuGGGG- -5'
3577 5' -53.1 NC_001650.1 + 51141 0.66 0.982812
Target:  5'- --cUACUacGGGCCCCCgGUcauaGugCCCg -3'
miRNA:   3'- guaAUGGauUCUGGGGGgUA----CugGGG- -5'
3577 5' -53.1 NC_001650.1 + 168662 0.66 0.980774
Target:  5'- --aUACUgc--ACCCCCCAcUGAUCCUa -3'
miRNA:   3'- guaAUGGauucUGGGGGGU-ACUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 27068 0.66 0.980774
Target:  5'- --gUACCUcuucGAGGCCCacuacaCCAgccUGGCCCa -3'
miRNA:   3'- guaAUGGA----UUCUGGGg-----GGU---ACUGGGg -5'
3577 5' -53.1 NC_001650.1 + 1824 0.66 0.982812
Target:  5'- --gUACUgc--ACCCCCCAcUGAUCCUa -3'
miRNA:   3'- guaAUGGauucUGGGGGGU-ACUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 130961 0.66 0.982812
Target:  5'- --cUACCU-GGACUCCCagaGGCCCg -3'
miRNA:   3'- guaAUGGAuUCUGGGGGguaCUGGGg -5'
3577 5' -53.1 NC_001650.1 + 168698 0.66 0.978561
Target:  5'- --cUACCUc--AUCCCCC-UGACCCg -3'
miRNA:   3'- guaAUGGAuucUGGGGGGuACUGGGg -5'
3577 5' -53.1 NC_001650.1 + 7534 0.66 0.984138
Target:  5'- uUAUUGCCcAAGG-CCCUCAUGcauauuuauugagcACCCCc -3'
miRNA:   3'- -GUAAUGGaUUCUgGGGGGUAC--------------UGGGG- -5'
3577 5' -53.1 NC_001650.1 + 148282 0.66 0.980774
Target:  5'- ---cGCCUcuuuaAAGuACCCCCCGauGCCCa -3'
miRNA:   3'- guaaUGGA-----UUC-UGGGGGGUacUGGGg -5'
3577 5' -53.1 NC_001650.1 + 1057 0.66 0.978561
Target:  5'- ---cGCUUAuguaaagcgguuGGGCCcaCCCCcgGGCCCCc -3'
miRNA:   3'- guaaUGGAU------------UCUGG--GGGGuaCUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 125 0.66 0.97991
Target:  5'- --gUGCuCUAAGuCCUCCCuaacccuaaucgGACCCCc -3'
miRNA:   3'- guaAUG-GAUUCuGGGGGGua----------CUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 86160 0.66 0.982812
Target:  5'- -uUUGCCgacgGAGACaugaCCCCcUGACCg- -3'
miRNA:   3'- guAAUGGa---UUCUGg---GGGGuACUGGgg -5'
3577 5' -53.1 NC_001650.1 + 54535 0.66 0.978561
Target:  5'- ---cACCgcucgcGACCCCCgGauuuugGACCCCu -3'
miRNA:   3'- guaaUGGauu---CUGGGGGgUa-----CUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 173381 0.66 0.980774
Target:  5'- uCAUUgGCCaugguAGuACCCCCUcgGcCCCCa -3'
miRNA:   3'- -GUAA-UGGau---UC-UGGGGGGuaCuGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.