miRNA display CGI


Results 1 - 20 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3577 5' -53.1 NC_001650.1 + 81 0.67 0.961195
Target:  5'- ---gGCCcGGGAaacCCCCCCucggGGCCCUc -3'
miRNA:   3'- guaaUGGaUUCU---GGGGGGua--CUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 125 0.66 0.97991
Target:  5'- --gUGCuCUAAGuCCUCCCuaacccuaaucgGACCCCc -3'
miRNA:   3'- guaAUG-GAUUCuGGGGGGua----------CUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 250 0.71 0.835766
Target:  5'- ----cCCUuuguGGCCCCCCGUGuucucuCCCCc -3'
miRNA:   3'- guaauGGAuu--CUGGGGGGUACu-----GGGG- -5'
3577 5' -53.1 NC_001650.1 + 615 0.67 0.96461
Target:  5'- --cUGCCgcc--CUCCCCcgGGCCCCc -3'
miRNA:   3'- guaAUGGauucuGGGGGGuaCUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 1057 0.66 0.978561
Target:  5'- ---cGCUUAuguaaagcgguuGGGCCcaCCCCcgGGCCCCc -3'
miRNA:   3'- guaaUGGAU------------UCUGG--GGGGuaCUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 1255 0.7 0.908287
Target:  5'- ----cCCUAuucccGCCCCCCG-GGCCCCc -3'
miRNA:   3'- guaauGGAUuc---UGGGGGGUaCUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 1558 0.68 0.945277
Target:  5'- --gUACCgc--ACCCCCCAccccaGACCCUg -3'
miRNA:   3'- guaAUGGauucUGGGGGGUa----CUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 1725 0.67 0.976166
Target:  5'- ---cGCCUAccucAUCCCCC-UGACCCa -3'
miRNA:   3'- guaaUGGAUuc--UGGGGGGuACUGGGg -5'
3577 5' -53.1 NC_001650.1 + 1824 0.66 0.982812
Target:  5'- --gUACUgc--ACCCCCCAcUGAUCCUa -3'
miRNA:   3'- guaAUGGauucUGGGGGGU-ACUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 1860 0.7 0.874751
Target:  5'- --cUACCUA--AUCCCCC-UGACCCg -3'
miRNA:   3'- guaAUGGAUucUGGGGGGuACUGGGg -5'
3577 5' -53.1 NC_001650.1 + 1956 0.66 0.982812
Target:  5'- --gUACUgc--ACCCCCCAcUGAUCCUa -3'
miRNA:   3'- guaAUGGauucUGGGGGGU-ACUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 2979 0.77 0.572266
Target:  5'- ---aGCCcuuuaUGGGcACuCCCCCAUGACCCCu -3'
miRNA:   3'- guaaUGG-----AUUC-UG-GGGGGUACUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 3068 0.67 0.97358
Target:  5'- ---gGCCcgGAGGCCUCCCAUuGGCUauCCu -3'
miRNA:   3'- guaaUGGa-UUCUGGGGGGUA-CUGG--GG- -5'
3577 5' -53.1 NC_001650.1 + 3319 0.66 0.986393
Target:  5'- uGUUGCCaGGGGCCagaaUCCAauaUGGCCUCc -3'
miRNA:   3'- gUAAUGGaUUCUGGg---GGGU---ACUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 3395 0.67 0.976166
Target:  5'- cCAU--CUUAGGACCCCCgGUaacuuCCCCu -3'
miRNA:   3'- -GUAauGGAUUCUGGGGGgUAcu---GGGG- -5'
3577 5' -53.1 NC_001650.1 + 3589 0.67 0.967808
Target:  5'- ----uCCUAAGAUggccgccccgCCCCaCGUGGCCCg -3'
miRNA:   3'- guaauGGAUUCUG----------GGGG-GUACUGGGg -5'
3577 5' -53.1 NC_001650.1 + 3647 0.68 0.949604
Target:  5'- ---gGCC---GACCCCCCGU--CCCCg -3'
miRNA:   3'- guaaUGGauuCUGGGGGGUAcuGGGG- -5'
3577 5' -53.1 NC_001650.1 + 4429 1.11 0.004944
Target:  5'- cCAUUACCUAAGACCCCCCAUGACCCCc -3'
miRNA:   3'- -GUAAUGGAUUCUGGGGGGUACUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 4721 0.7 0.874751
Target:  5'- cCAUgggGCUccgGAGGCCCUCCGUG-CCCg -3'
miRNA:   3'- -GUAa--UGGa--UUCUGGGGGGUACuGGGg -5'
3577 5' -53.1 NC_001650.1 + 4861 0.76 0.592652
Target:  5'- ----nCCaAAGACCCCCCGgacaaaGACCCCu -3'
miRNA:   3'- guaauGGaUUCUGGGGGGUa-----CUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.