miRNA display CGI


Results 1 - 20 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3577 5' -53.1 NC_001650.1 + 171136 1.11 0.004944
Target:  5'- cCAUUACCUAAGACCCCCCAUGACCCCc -3'
miRNA:   3'- -GUAAUGGAUUCUGGGGGGUACUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 4429 1.11 0.004944
Target:  5'- cCAUUACCUAAGACCCCCCAUGACCCCc -3'
miRNA:   3'- -GUAAUGGAUUCUGGGGGGUACUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 53472 0.83 0.273302
Target:  5'- ---gGCCUc-GACCuCCCCGUGACCCCg -3'
miRNA:   3'- guaaUGGAuuCUGG-GGGGUACUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 8050 0.82 0.307283
Target:  5'- --aUACCcacAGGCCCCCCAuUGGCCCCc -3'
miRNA:   3'- guaAUGGau-UCUGGGGGGU-ACUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 174757 0.82 0.307283
Target:  5'- --aUACCcacAGGCCCCCCAuUGGCCCCc -3'
miRNA:   3'- guaAUGGau-UCUGGGGGGU-ACUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 165947 0.8 0.401581
Target:  5'- ---gGCCUAAGAgCCgCCCcgGGCCCCc -3'
miRNA:   3'- guaaUGGAUUCUgGG-GGGuaCUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 11925 0.79 0.445944
Target:  5'- ---cACCUAua--CCCCCAUGACCCCc -3'
miRNA:   3'- guaaUGGAUucugGGGGGUACUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 178582 0.79 0.445944
Target:  5'- ---cACCUAua--CCCCCAUGACCCCc -3'
miRNA:   3'- guaaUGGAUucugGGGGGUACUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 178607 0.79 0.445944
Target:  5'- ---cACCUAua--CCCCCAUGACCCCc -3'
miRNA:   3'- guaaUGGAUucugGGGGGUACUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 11875 0.79 0.445944
Target:  5'- ---cACCUAua--CCCCCAUGACCCCc -3'
miRNA:   3'- guaaUGGAUucugGGGGGUACUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 11900 0.79 0.445944
Target:  5'- ---cACCUAua--CCCCCAUGACCCCc -3'
miRNA:   3'- guaaUGGAUucugGGGGGUACUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 4880 0.79 0.445944
Target:  5'- ----cUUUAAGACCCCCCG-GACCCCc -3'
miRNA:   3'- guaauGGAUUCUGGGGGGUaCUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 171587 0.79 0.445944
Target:  5'- ----cUUUAAGACCCCCCG-GACCCCc -3'
miRNA:   3'- guaauGGAUUCUGGGGGGUaCUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 52829 0.79 0.455142
Target:  5'- --gUGCCgAGGACCCCCgggccaGUGGCCCCc -3'
miRNA:   3'- guaAUGGaUUCUGGGGGg-----UACUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 112652 0.79 0.46444
Target:  5'- gAUUGCCccaccuGACCaCCCAUGACCCCc -3'
miRNA:   3'- gUAAUGGauu---CUGGgGGGUACUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 21967 0.77 0.522158
Target:  5'- --cUACCUGGGcuucacGCCCCUCGggGACCCCg -3'
miRNA:   3'- guaAUGGAUUC------UGGGGGGUa-CUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 169686 0.77 0.572266
Target:  5'- ---aGCCcuuuaUGGGcACuCCCCCAUGACCCCu -3'
miRNA:   3'- guaaUGG-----AUUC-UG-GGGGGUACUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 2979 0.77 0.572266
Target:  5'- ---aGCCcuuuaUGGGcACuCCCCCAUGACCCCu -3'
miRNA:   3'- guaaUGG-----AUUC-UG-GGGGGUACUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 7764 0.76 0.582441
Target:  5'- aUAUUGCCUcAGGCCCCCCgaugcauaugcaGUGAgUCCa -3'
miRNA:   3'- -GUAAUGGAuUCUGGGGGG------------UACUgGGG- -5'
3577 5' -53.1 NC_001650.1 + 174471 0.76 0.582441
Target:  5'- aUAUUGCCUcAGGCCCCCCgaugcauaugcaGUGAgUCCa -3'
miRNA:   3'- -GUAAUGGAuUCUGGGGGG------------UACUgGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.