miRNA display CGI


Results 1 - 20 of 280 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3577 5' -53.1 NC_001650.1 + 136158 0.73 0.764127
Target:  5'- ---cGCCUGAaggcGCCCCCCGcGGCCUCg -3'
miRNA:   3'- guaaUGGAUUc---UGGGGGGUaCUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 11732 0.75 0.664522
Target:  5'- ---gACCgaGAGACCUCCCGUGgACCUCa -3'
miRNA:   3'- guaaUGGa-UUCUGGGGGGUAC-UGGGG- -5'
3577 5' -53.1 NC_001650.1 + 127173 0.75 0.664522
Target:  5'- -uUUGCUUGuuuuGGccaACCCCCCAUcGGCCCCg -3'
miRNA:   3'- guAAUGGAU----UC---UGGGGGGUA-CUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 178439 0.75 0.664522
Target:  5'- ---gACCgaGAGACCUCCCGUGgACCUCa -3'
miRNA:   3'- guaaUGGa-UUCUGGGGGGUAC-UGGGG- -5'
3577 5' -53.1 NC_001650.1 + 56463 0.74 0.725183
Target:  5'- --cUGCCUc--GCCCCUCGcUGACCCCa -3'
miRNA:   3'- guaAUGGAuucUGGGGGGU-ACUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 155615 0.74 0.725183
Target:  5'- aGUUGgCgc--GCgCCCCCGUGACCCCg -3'
miRNA:   3'- gUAAUgGauucUG-GGGGGUACUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 73479 0.74 0.735063
Target:  5'- ---cGCCUGccacGGCCCCCCG-GGCCUCa -3'
miRNA:   3'- guaaUGGAUu---CUGGGGGGUaCUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 14429 0.74 0.735063
Target:  5'- ---gACCUcu-ACCCCCCuugGACCCCu -3'
miRNA:   3'- guaaUGGAuucUGGGGGGua-CUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 181136 0.74 0.735063
Target:  5'- ---gACCUcu-ACCCCCCuugGACCCCu -3'
miRNA:   3'- guaaUGGAuucUGGGGGGua-CUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 133925 0.75 0.654267
Target:  5'- ---cAgCUGGGggcGCCCCCCA-GACCCCg -3'
miRNA:   3'- guaaUgGAUUC---UGGGGGGUaCUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 174471 0.76 0.582441
Target:  5'- aUAUUGCCUcAGGCCCCCCgaugcauaugcaGUGAgUCCa -3'
miRNA:   3'- -GUAAUGGAuUCUGGGGGG------------UACUgGGG- -5'
3577 5' -53.1 NC_001650.1 + 23430 0.76 0.582441
Target:  5'- ---gACCUggGAGACCCCCCAgGugCCg -3'
miRNA:   3'- guaaUGGA--UUCUGGGGGGUaCugGGg -5'
3577 5' -53.1 NC_001650.1 + 174757 0.82 0.307283
Target:  5'- --aUACCcacAGGCCCCCCAuUGGCCCCc -3'
miRNA:   3'- guaAUGGau-UCUGGGGGGU-ACUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 11875 0.79 0.445944
Target:  5'- ---cACCUAua--CCCCCAUGACCCCc -3'
miRNA:   3'- guaaUGGAUucugGGGGGUACUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 11900 0.79 0.445944
Target:  5'- ---cACCUAua--CCCCCAUGACCCCc -3'
miRNA:   3'- guaaUGGAUucugGGGGGUACUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 11925 0.79 0.445944
Target:  5'- ---cACCUAua--CCCCCAUGACCCCc -3'
miRNA:   3'- guaaUGGAUucugGGGGGUACUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 178582 0.79 0.445944
Target:  5'- ---cACCUAua--CCCCCAUGACCCCc -3'
miRNA:   3'- guaaUGGAUucugGGGGGUACUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 178607 0.79 0.445944
Target:  5'- ---cACCUAua--CCCCCAUGACCCCc -3'
miRNA:   3'- guaaUGGAUucugGGGGGUACUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 21967 0.77 0.522158
Target:  5'- --cUACCUGGGcuucacGCCCCUCGggGACCCCg -3'
miRNA:   3'- guaAUGGAUUC------UGGGGGGUa-CUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 7764 0.76 0.582441
Target:  5'- aUAUUGCCUcAGGCCCCCCgaugcauaugcaGUGAgUCCa -3'
miRNA:   3'- -GUAAUGGAuUCUGGGGGG------------UACUgGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.