miRNA display CGI


Results 21 - 40 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3577 5' -53.1 NC_001650.1 + 23430 0.76 0.582441
Target:  5'- ---gACCUggGAGACCCCCCAgGugCCg -3'
miRNA:   3'- guaaUGGA--UUCUGGGGGGUaCugGGg -5'
3577 5' -53.1 NC_001650.1 + 171568 0.76 0.592652
Target:  5'- ----nCCaAAGACCCCCCGgacaaaGACCCCu -3'
miRNA:   3'- guaauGGaUUCUGGGGGGUa-----CUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 4861 0.76 0.592652
Target:  5'- ----nCCaAAGACCCCCCGgacaaaGACCCCu -3'
miRNA:   3'- guaauGGaUUCUGGGGGGUa-----CUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 133925 0.75 0.654267
Target:  5'- ---cAgCUGGGggcGCCCCCCA-GACCCCg -3'
miRNA:   3'- guaaUgGAUUC---UGGGGGGUaCUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 11732 0.75 0.664522
Target:  5'- ---gACCgaGAGACCUCCCGUGgACCUCa -3'
miRNA:   3'- guaaUGGa-UUCUGGGGGGUAC-UGGGG- -5'
3577 5' -53.1 NC_001650.1 + 127173 0.75 0.664522
Target:  5'- -uUUGCUUGuuuuGGccaACCCCCCAUcGGCCCCg -3'
miRNA:   3'- guAAUGGAU----UC---UGGGGGGUA-CUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 178439 0.75 0.664522
Target:  5'- ---gACCgaGAGACCUCCCGUGgACCUCa -3'
miRNA:   3'- guaaUGGa-UUCUGGGGGGUAC-UGGGG- -5'
3577 5' -53.1 NC_001650.1 + 78564 0.75 0.664522
Target:  5'- ---gGCCUGAGcCCCCCCucugucaggAUGGCCUCc -3'
miRNA:   3'- guaaUGGAUUCuGGGGGG---------UACUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 15533 0.74 0.695092
Target:  5'- -cUUACCUccucuGCCCCCCGUGcagccGCCCCu -3'
miRNA:   3'- guAAUGGAuuc--UGGGGGGUAC-----UGGGG- -5'
3577 5' -53.1 NC_001650.1 + 182240 0.74 0.695092
Target:  5'- -cUUACCUccucuGCCCCCCGUGcagccGCCCCu -3'
miRNA:   3'- guAAUGGAuuc--UGGGGGGUAC-----UGGGG- -5'
3577 5' -53.1 NC_001650.1 + 130872 0.74 0.705187
Target:  5'- ---gGCCUu--GCCCCCgGUGACCCUc -3'
miRNA:   3'- guaaUGGAuucUGGGGGgUACUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 36230 0.74 0.705187
Target:  5'- ----uCCUGGGcGCCUCCCccGACCCCg -3'
miRNA:   3'- guaauGGAUUC-UGGGGGGuaCUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 23032 0.74 0.709209
Target:  5'- ---cGCCUccucgggcagGAGGCUgguguaggucuugagCCCCAUGACCCCg -3'
miRNA:   3'- guaaUGGA----------UUCUGG---------------GGGGUACUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 114769 0.74 0.725183
Target:  5'- ---aGCCU-GGACCCgCCGcgGACCCCc -3'
miRNA:   3'- guaaUGGAuUCUGGGgGGUa-CUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 155615 0.74 0.725183
Target:  5'- aGUUGgCgc--GCgCCCCCGUGACCCCg -3'
miRNA:   3'- gUAAUgGauucUG-GGGGGUACUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 56463 0.74 0.725183
Target:  5'- --cUGCCUc--GCCCCUCGcUGACCCCa -3'
miRNA:   3'- guaAUGGAuucUGGGGGGU-ACUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 14429 0.74 0.735063
Target:  5'- ---gACCUcu-ACCCCCCuugGACCCCu -3'
miRNA:   3'- guaaUGGAuucUGGGGGGua-CUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 181136 0.74 0.735063
Target:  5'- ---gACCUcu-ACCCCCCuugGACCCCu -3'
miRNA:   3'- guaaUGGAuucUGGGGGGua-CUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 73479 0.74 0.735063
Target:  5'- ---cGCCUGccacGGCCCCCCG-GGCCUCa -3'
miRNA:   3'- guaaUGGAUu---CUGGGGGGUaCUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 171936 0.73 0.754545
Target:  5'- ---cGCCUAucagacacacggAGGCCCCCCG-GAgCCCa -3'
miRNA:   3'- guaaUGGAU------------UCUGGGGGGUaCUgGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.