miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3578 3' -51.8 NC_001650.1 + 147399 0.68 0.972322
Target:  5'- gGGGGUGGagUUAGAGGGUg------- -3'
miRNA:   3'- -UCCCACCagGAUCUCCCAgaaauucu -5'
3578 3' -51.8 NC_001650.1 + 100563 0.68 0.97504
Target:  5'- gAGGaGcgGGUCCUGGAGuGUUUUgugGAGAg -3'
miRNA:   3'- -UCC-Ca-CCAGGAUCUCcCAGAAa--UUCU- -5'
3578 3' -51.8 NC_001650.1 + 74580 0.67 0.977558
Target:  5'- cAGGGUGG-CCUcGGAGaGGUag--GAGAa -3'
miRNA:   3'- -UCCCACCaGGA-UCUC-CCAgaaaUUCU- -5'
3578 3' -51.8 NC_001650.1 + 16518 0.67 0.979883
Target:  5'- uGGGUGG-CCacAGAGGGUCa------ -3'
miRNA:   3'- uCCCACCaGGa-UCUCCCAGaaauucu -5'
3578 3' -51.8 NC_001650.1 + 183225 0.67 0.979883
Target:  5'- uGGGUGG-CCacAGAGGGUCa------ -3'
miRNA:   3'- uCCCACCaGGa-UCUCCCAGaaauucu -5'
3578 3' -51.8 NC_001650.1 + 70482 0.67 0.982025
Target:  5'- uGGGGUGGacgcCCUGGAGaGGgggCUgguGGAc -3'
miRNA:   3'- -UCCCACCa---GGAUCUC-CCa--GAaauUCU- -5'
3578 3' -51.8 NC_001650.1 + 181036 0.67 0.98399
Target:  5'- cGGGUGGUCa---GGGGUCcuggccugUAAGAg -3'
miRNA:   3'- uCCCACCAGgaucUCCCAGaa------AUUCU- -5'
3578 3' -51.8 NC_001650.1 + 8825 0.67 0.98399
Target:  5'- uGGG-GGUCUgguggguguGGGGGUCcUUGGGAu -3'
miRNA:   3'- uCCCaCCAGGau-------CUCCCAGaAAUUCU- -5'
3578 3' -51.8 NC_001650.1 + 175532 0.67 0.98399
Target:  5'- uGGG-GGUCUgguggguguGGGGGUCcUUGGGAu -3'
miRNA:   3'- uCCCaCCAGGau-------CUCCCAGaAAUUCU- -5'
3578 3' -51.8 NC_001650.1 + 14329 0.67 0.98399
Target:  5'- cGGGUGGUCa---GGGGUCcuggccugUAAGAg -3'
miRNA:   3'- uCCCACCAGgaucUCCCAGaa------AUUCU- -5'
3578 3' -51.8 NC_001650.1 + 179033 0.66 0.987427
Target:  5'- uGGGUGuGUgCCaGGGGGGUUUggggUGGGGc -3'
miRNA:   3'- uCCCAC-CA-GGaUCUCCCAGAa---AUUCU- -5'
3578 3' -51.8 NC_001650.1 + 49577 0.66 0.987427
Target:  5'- cGGGGUGGUCuCUGugauGGGGG-Cg--GAGGu -3'
miRNA:   3'- -UCCCACCAG-GAU----CUCCCaGaaaUUCU- -5'
3578 3' -51.8 NC_001650.1 + 157220 0.66 0.987427
Target:  5'- cGGGUGGUCUUcuucacGGGGGaCUcgAAGGg -3'
miRNA:   3'- uCCCACCAGGAu-----CUCCCaGAaaUUCU- -5'
3578 3' -51.8 NC_001650.1 + 3096 0.66 0.987427
Target:  5'- uAGGGUGGg-CUAGGGGGUg------- -3'
miRNA:   3'- -UCCCACCagGAUCUCCCAgaaauucu -5'
3578 3' -51.8 NC_001650.1 + 12326 0.66 0.987427
Target:  5'- uGGGUGuGUgCCaGGGGGGUUUggggUGGGGc -3'
miRNA:   3'- uCCCAC-CA-GGaUCUCCCAGAa---AUUCU- -5'
3578 3' -51.8 NC_001650.1 + 169803 0.66 0.987427
Target:  5'- uAGGGUGGg-CUAGGGGGUg------- -3'
miRNA:   3'- -UCCCACCagGAUCUCCCAgaaauucu -5'
3578 3' -51.8 NC_001650.1 + 97138 0.66 0.98863
Target:  5'- -cGGUGGUCUacccgggggaggAGAGGGUCUUUu--- -3'
miRNA:   3'- ucCCACCAGGa-----------UCUCCCAGAAAuucu -5'
3578 3' -51.8 NC_001650.1 + 111682 0.66 0.991481
Target:  5'- gGGGGUGG-CCUGGGGuaUCUUg---- -3'
miRNA:   3'- -UCCCACCaGGAUCUCccAGAAauucu -5'
3578 3' -51.8 NC_001650.1 + 130071 0.66 0.991481
Target:  5'- gGGGGUGGagagggCCggGGAGGGgg---GAGAg -3'
miRNA:   3'- -UCCCACCa-----GGa-UCUCCCagaaaUUCU- -5'
3578 3' -51.8 NC_001650.1 + 181594 0.66 0.991481
Target:  5'- cGGGUccgGGUCCgcgaGGAGGGggg--GAGAg -3'
miRNA:   3'- uCCCA---CCAGGa---UCUCCCagaaaUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.