miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3578 3' -51.8 NC_001650.1 + 171606 1.09 0.008185
Target:  5'- cAGGGUGGUCCUAGAGGGUCUUUAAGAc -3'
miRNA:   3'- -UCCCACCAGGAUCUCCCAGAAAUUCU- -5'
3578 3' -51.8 NC_001650.1 + 4899 1.09 0.008185
Target:  5'- cAGGGUGGUCCUAGAGGGUCUUUAAGAc -3'
miRNA:   3'- -UCCCACCAGGAUCUCCCAGAAAUUCU- -5'
3578 3' -51.8 NC_001650.1 + 85740 0.8 0.450742
Target:  5'- cAGGGUGGUCUUGGAGGGggagUUAuAGAg -3'
miRNA:   3'- -UCCCACCAGGAUCUCCCaga-AAU-UCU- -5'
3578 3' -51.8 NC_001650.1 + 4675 0.77 0.600484
Target:  5'- uGGG-GGUCC-GGGGGGUCUUaAAGAc -3'
miRNA:   3'- uCCCaCCAGGaUCUCCCAGAAaUUCU- -5'
3578 3' -51.8 NC_001650.1 + 171382 0.77 0.600484
Target:  5'- uGGG-GGUCC-GGGGGGUCUUaAAGAc -3'
miRNA:   3'- uCCCaCCAGGaUCUCCCAGAAaUUCU- -5'
3578 3' -51.8 NC_001650.1 + 58163 0.72 0.853424
Target:  5'- gGGGGUGGUggcgauggcugCCgugGGAGGGUCUUc---- -3'
miRNA:   3'- -UCCCACCA-----------GGa--UCUCCCAGAAauucu -5'
3578 3' -51.8 NC_001650.1 + 4216 0.72 0.861313
Target:  5'- uGGGG-GGUCaUGGGGGGUCUU--AGGu -3'
miRNA:   3'- -UCCCaCCAGgAUCUCCCAGAAauUCU- -5'
3578 3' -51.8 NC_001650.1 + 170923 0.72 0.861313
Target:  5'- uGGGG-GGUCaUGGGGGGUCUU--AGGu -3'
miRNA:   3'- -UCCCaCCAGgAUCUCCCAGAAauUCU- -5'
3578 3' -51.8 NC_001650.1 + 181407 0.71 0.890655
Target:  5'- cGGG-GGUCCaAGGGGGUUggcaGAGAu -3'
miRNA:   3'- uCCCaCCAGGaUCUCCCAGaaa-UUCU- -5'
3578 3' -51.8 NC_001650.1 + 14700 0.71 0.890655
Target:  5'- cGGG-GGUCCaAGGGGGUUggcaGAGAu -3'
miRNA:   3'- uCCCaCCAGGaUCUCCCAGaaa-UUCU- -5'
3578 3' -51.8 NC_001650.1 + 8658 0.7 0.91622
Target:  5'- uGGGUGGUCCaUGGuguuGGGUgaUUGGGu -3'
miRNA:   3'- uCCCACCAGG-AUCu---CCCAgaAAUUCu -5'
3578 3' -51.8 NC_001650.1 + 175365 0.7 0.91622
Target:  5'- uGGGUGGUCCaUGGuguuGGGUgaUUGGGu -3'
miRNA:   3'- uCCCACCAGG-AUCu---CCCAgaAAUUCu -5'
3578 3' -51.8 NC_001650.1 + 12521 0.7 0.918561
Target:  5'- uGGGUGGUCCcuucucucuuguacaUGG-GGGUCccUGGGAg -3'
miRNA:   3'- uCCCACCAGG---------------AUCuCCCAGaaAUUCU- -5'
3578 3' -51.8 NC_001650.1 + 179228 0.7 0.918561
Target:  5'- uGGGUGGUCCcuucucucuuguacaUGG-GGGUCccUGGGAg -3'
miRNA:   3'- uCCCACCAGG---------------AUCuCCCAGaaAUUCU- -5'
3578 3' -51.8 NC_001650.1 + 100638 0.7 0.927524
Target:  5'- cGGG-GGcCCcugGGAGGGUCUgaugGAGGa -3'
miRNA:   3'- uCCCaCCaGGa--UCUCCCAGAaa--UUCU- -5'
3578 3' -51.8 NC_001650.1 + 43668 0.69 0.951443
Target:  5'- cGGGGUGGcgcgCUcggUAGAGGGUUgccagUGAGGc -3'
miRNA:   3'- -UCCCACCa---GG---AUCUCCCAGaa---AUUCU- -5'
3578 3' -51.8 NC_001650.1 + 100736 0.69 0.959313
Target:  5'- aGGGGUGGUgCC--GGGGGUCcgucacgGAGAu -3'
miRNA:   3'- -UCCCACCA-GGauCUCCCAGaaa----UUCU- -5'
3578 3' -51.8 NC_001650.1 + 148457 0.69 0.959313
Target:  5'- uGGGcaauGUGGUCUgggguuuaggAGAGGGUCUUgGGGGg -3'
miRNA:   3'- -UCC----CACCAGGa---------UCUCCCAGAAaUUCU- -5'
3578 3' -51.8 NC_001650.1 + 114103 0.68 0.962899
Target:  5'- -aGGUccaGGUaCCUGcuGAGGGUCUUUGAGu -3'
miRNA:   3'- ucCCA---CCA-GGAU--CUCCCAGAAAUUCu -5'
3578 3' -51.8 NC_001650.1 + 123201 0.68 0.966258
Target:  5'- gGGGGUGGUCUcGGGGGGa-------- -3'
miRNA:   3'- -UCCCACCAGGaUCUCCCagaaauucu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.