miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3578 3' -51.8 NC_001650.1 + 3096 0.66 0.987427
Target:  5'- uAGGGUGGg-CUAGGGGGUg------- -3'
miRNA:   3'- -UCCCACCagGAUCUCCCAgaaauucu -5'
3578 3' -51.8 NC_001650.1 + 4216 0.72 0.861313
Target:  5'- uGGGG-GGUCaUGGGGGGUCUU--AGGu -3'
miRNA:   3'- -UCCCaCCAGgAUCUCCCAGAAauUCU- -5'
3578 3' -51.8 NC_001650.1 + 4675 0.77 0.600484
Target:  5'- uGGG-GGUCC-GGGGGGUCUUaAAGAc -3'
miRNA:   3'- uCCCaCCAGGaUCUCCCAGAAaUUCU- -5'
3578 3' -51.8 NC_001650.1 + 4899 1.09 0.008185
Target:  5'- cAGGGUGGUCCUAGAGGGUCUUUAAGAc -3'
miRNA:   3'- -UCCCACCAGGAUCUCCCAGAAAUUCU- -5'
3578 3' -51.8 NC_001650.1 + 8658 0.7 0.91622
Target:  5'- uGGGUGGUCCaUGGuguuGGGUgaUUGGGu -3'
miRNA:   3'- uCCCACCAGG-AUCu---CCCAgaAAUUCu -5'
3578 3' -51.8 NC_001650.1 + 8825 0.67 0.98399
Target:  5'- uGGG-GGUCUgguggguguGGGGGUCcUUGGGAu -3'
miRNA:   3'- uCCCaCCAGGau-------CUCCCAGaAAUUCU- -5'
3578 3' -51.8 NC_001650.1 + 12326 0.66 0.987427
Target:  5'- uGGGUGuGUgCCaGGGGGGUUUggggUGGGGc -3'
miRNA:   3'- uCCCAC-CA-GGaUCUCCCAGAa---AUUCU- -5'
3578 3' -51.8 NC_001650.1 + 12521 0.7 0.918561
Target:  5'- uGGGUGGUCCcuucucucuuguacaUGG-GGGUCccUGGGAg -3'
miRNA:   3'- uCCCACCAGG---------------AUCuCCCAGaaAUUCU- -5'
3578 3' -51.8 NC_001650.1 + 14141 0.66 0.992574
Target:  5'- gGGGGcuccaUGGUCCc-GGGGGUCcagGGGGg -3'
miRNA:   3'- -UCCC-----ACCAGGauCUCCCAGaaaUUCU- -5'
3578 3' -51.8 NC_001650.1 + 14329 0.67 0.98399
Target:  5'- cGGGUGGUCa---GGGGUCcuggccugUAAGAg -3'
miRNA:   3'- uCCCACCAGgaucUCCCAGaa------AUUCU- -5'
3578 3' -51.8 NC_001650.1 + 14700 0.71 0.890655
Target:  5'- cGGG-GGUCCaAGGGGGUUggcaGAGAu -3'
miRNA:   3'- uCCCaCCAGGaUCUCCCAGaaa-UUCU- -5'
3578 3' -51.8 NC_001650.1 + 14887 0.66 0.991481
Target:  5'- cGGGUccgGGUCCgcgaGGAGGGggg--GAGAg -3'
miRNA:   3'- uCCCA---CCAGGa---UCUCCCagaaaUUCU- -5'
3578 3' -51.8 NC_001650.1 + 16518 0.67 0.979883
Target:  5'- uGGGUGG-CCacAGAGGGUCa------ -3'
miRNA:   3'- uCCCACCaGGa-UCUCCCAGaaauucu -5'
3578 3' -51.8 NC_001650.1 + 29393 0.66 0.993553
Target:  5'- cGGcGGUGG-CCUucgagauagAGGGGGUCaggAGGAg -3'
miRNA:   3'- -UC-CCACCaGGA---------UCUCCCAGaaaUUCU- -5'
3578 3' -51.8 NC_001650.1 + 43668 0.69 0.951443
Target:  5'- cGGGGUGGcgcgCUcggUAGAGGGUUgccagUGAGGc -3'
miRNA:   3'- -UCCCACCa---GG---AUCUCCCAGaa---AUUCU- -5'
3578 3' -51.8 NC_001650.1 + 49577 0.66 0.987427
Target:  5'- cGGGGUGGUCuCUGugauGGGGG-Cg--GAGGu -3'
miRNA:   3'- -UCCCACCAG-GAU----CUCCCaGaaaUUCU- -5'
3578 3' -51.8 NC_001650.1 + 56213 0.66 0.993553
Target:  5'- gGGGGUGGUUgUuagugggguGGGGGUUUgcaAAGAc -3'
miRNA:   3'- -UCCCACCAGgAu--------CUCCCAGAaa-UUCU- -5'
3578 3' -51.8 NC_001650.1 + 58163 0.72 0.853424
Target:  5'- gGGGGUGGUggcgauggcugCCgugGGAGGGUCUUc---- -3'
miRNA:   3'- -UCCCACCA-----------GGa--UCUCCCAGAAauucu -5'
3578 3' -51.8 NC_001650.1 + 69151 0.66 0.992574
Target:  5'- cAGGGUGGUagCCagGGAGGGgggCggcguAGAg -3'
miRNA:   3'- -UCCCACCA--GGa-UCUCCCa--Gaaau-UCU- -5'
3578 3' -51.8 NC_001650.1 + 70482 0.67 0.982025
Target:  5'- uGGGGUGGacgcCCUGGAGaGGgggCUgguGGAc -3'
miRNA:   3'- -UCCCACCa---GGAUCUC-CCa--GAaauUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.