miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3578 3' -51.8 NC_001650.1 + 183225 0.67 0.979883
Target:  5'- uGGGUGG-CCacAGAGGGUCa------ -3'
miRNA:   3'- uCCCACCaGGa-UCUCCCAGaaauucu -5'
3578 3' -51.8 NC_001650.1 + 181594 0.66 0.991481
Target:  5'- cGGGUccgGGUCCgcgaGGAGGGggg--GAGAg -3'
miRNA:   3'- uCCCA---CCAGGa---UCUCCCagaaaUUCU- -5'
3578 3' -51.8 NC_001650.1 + 181407 0.71 0.890655
Target:  5'- cGGG-GGUCCaAGGGGGUUggcaGAGAu -3'
miRNA:   3'- uCCCaCCAGGaUCUCCCAGaaa-UUCU- -5'
3578 3' -51.8 NC_001650.1 + 181036 0.67 0.98399
Target:  5'- cGGGUGGUCa---GGGGUCcuggccugUAAGAg -3'
miRNA:   3'- uCCCACCAGgaucUCCCAGaa------AUUCU- -5'
3578 3' -51.8 NC_001650.1 + 180848 0.66 0.992574
Target:  5'- gGGGGcuccaUGGUCCc-GGGGGUCcagGGGGg -3'
miRNA:   3'- -UCCC-----ACCAGGauCUCCCAGaaaUUCU- -5'
3578 3' -51.8 NC_001650.1 + 179228 0.7 0.918561
Target:  5'- uGGGUGGUCCcuucucucuuguacaUGG-GGGUCccUGGGAg -3'
miRNA:   3'- uCCCACCAGG---------------AUCuCCCAGaaAUUCU- -5'
3578 3' -51.8 NC_001650.1 + 179033 0.66 0.987427
Target:  5'- uGGGUGuGUgCCaGGGGGGUUUggggUGGGGc -3'
miRNA:   3'- uCCCAC-CA-GGaUCUCCCAGAa---AUUCU- -5'
3578 3' -51.8 NC_001650.1 + 175532 0.67 0.98399
Target:  5'- uGGG-GGUCUgguggguguGGGGGUCcUUGGGAu -3'
miRNA:   3'- uCCCaCCAGGau-------CUCCCAGaAAUUCU- -5'
3578 3' -51.8 NC_001650.1 + 175365 0.7 0.91622
Target:  5'- uGGGUGGUCCaUGGuguuGGGUgaUUGGGu -3'
miRNA:   3'- uCCCACCAGG-AUCu---CCCAgaAAUUCu -5'
3578 3' -51.8 NC_001650.1 + 171606 1.09 0.008185
Target:  5'- cAGGGUGGUCCUAGAGGGUCUUUAAGAc -3'
miRNA:   3'- -UCCCACCAGGAUCUCCCAGAAAUUCU- -5'
3578 3' -51.8 NC_001650.1 + 171382 0.77 0.600484
Target:  5'- uGGG-GGUCC-GGGGGGUCUUaAAGAc -3'
miRNA:   3'- uCCCaCCAGGaUCUCCCAGAAaUUCU- -5'
3578 3' -51.8 NC_001650.1 + 170923 0.72 0.861313
Target:  5'- uGGGG-GGUCaUGGGGGGUCUU--AGGu -3'
miRNA:   3'- -UCCCaCCAGgAUCUCCCAGAAauUCU- -5'
3578 3' -51.8 NC_001650.1 + 169803 0.66 0.987427
Target:  5'- uAGGGUGGg-CUAGGGGGUg------- -3'
miRNA:   3'- -UCCCACCagGAUCUCCCAgaaauucu -5'
3578 3' -51.8 NC_001650.1 + 157220 0.66 0.987427
Target:  5'- cGGGUGGUCUUcuucacGGGGGaCUcgAAGGg -3'
miRNA:   3'- uCCCACCAGGAu-----CUCCCaGAaaUUCU- -5'
3578 3' -51.8 NC_001650.1 + 152066 0.66 0.993553
Target:  5'- uGGaucUGGUCCUGGuuuGGGGUCUuccUUGGGu -3'
miRNA:   3'- uCCc--ACCAGGAUC---UCCCAGA---AAUUCu -5'
3578 3' -51.8 NC_001650.1 + 148457 0.69 0.959313
Target:  5'- uGGGcaauGUGGUCUgggguuuaggAGAGGGUCUUgGGGGg -3'
miRNA:   3'- -UCC----CACCAGGa---------UCUCCCAGAAaUUCU- -5'
3578 3' -51.8 NC_001650.1 + 147399 0.68 0.972322
Target:  5'- gGGGGUGGagUUAGAGGGUg------- -3'
miRNA:   3'- -UCCCACCagGAUCUCCCAgaaauucu -5'
3578 3' -51.8 NC_001650.1 + 130071 0.66 0.991481
Target:  5'- gGGGGUGGagagggCCggGGAGGGgg---GAGAg -3'
miRNA:   3'- -UCCCACCa-----GGa-UCUCCCagaaaUUCU- -5'
3578 3' -51.8 NC_001650.1 + 123201 0.68 0.966258
Target:  5'- gGGGGUGGUCUcGGGGGGa-------- -3'
miRNA:   3'- -UCCCACCAGGaUCUCCCagaaauucu -5'
3578 3' -51.8 NC_001650.1 + 114103 0.68 0.962899
Target:  5'- -aGGUccaGGUaCCUGcuGAGGGUCUUUGAGu -3'
miRNA:   3'- ucCCA---CCA-GGAU--CUCCCAGAAAUUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.