miRNA display CGI


Results 1 - 20 of 48 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3578 3' -51.8 NC_001650.1 + 4675 0.77 0.600484
Target:  5'- uGGG-GGUCC-GGGGGGUCUUaAAGAc -3'
miRNA:   3'- uCCCaCCAGGaUCUCCCAGAAaUUCU- -5'
3578 3' -51.8 NC_001650.1 + 29393 0.66 0.993553
Target:  5'- cGGcGGUGG-CCUucgagauagAGGGGGUCaggAGGAg -3'
miRNA:   3'- -UC-CCACCaGGA---------UCUCCCAGaaaUUCU- -5'
3578 3' -51.8 NC_001650.1 + 152066 0.66 0.993553
Target:  5'- uGGaucUGGUCCUGGuuuGGGGUCUuccUUGGGu -3'
miRNA:   3'- uCCc--ACCAGGAUC---UCCCAGA---AAUUCu -5'
3578 3' -51.8 NC_001650.1 + 130071 0.66 0.991481
Target:  5'- gGGGGUGGagagggCCggGGAGGGgg---GAGAg -3'
miRNA:   3'- -UCCCACCa-----GGa-UCUCCCagaaaUUCU- -5'
3578 3' -51.8 NC_001650.1 + 49577 0.66 0.987427
Target:  5'- cGGGGUGGUCuCUGugauGGGGG-Cg--GAGGu -3'
miRNA:   3'- -UCCCACCAG-GAU----CUCCCaGaaaUUCU- -5'
3578 3' -51.8 NC_001650.1 + 157220 0.66 0.987427
Target:  5'- cGGGUGGUCUUcuucacGGGGGaCUcgAAGGg -3'
miRNA:   3'- uCCCACCAGGAu-----CUCCCaGAaaUUCU- -5'
3578 3' -51.8 NC_001650.1 + 70482 0.67 0.982025
Target:  5'- uGGGGUGGacgcCCUGGAGaGGgggCUgguGGAc -3'
miRNA:   3'- -UCCCACCa---GGAUCUC-CCa--GAaauUCU- -5'
3578 3' -51.8 NC_001650.1 + 147399 0.68 0.972322
Target:  5'- gGGGGUGGagUUAGAGGGUg------- -3'
miRNA:   3'- -UCCCACCagGAUCUCCCAgaaauucu -5'
3578 3' -51.8 NC_001650.1 + 114103 0.68 0.962899
Target:  5'- -aGGUccaGGUaCCUGcuGAGGGUCUUUGAGu -3'
miRNA:   3'- ucCCA---CCA-GGAU--CUCCCAGAAAUUCu -5'
3578 3' -51.8 NC_001650.1 + 100736 0.69 0.959313
Target:  5'- aGGGGUGGUgCC--GGGGGUCcgucacgGAGAu -3'
miRNA:   3'- -UCCCACCA-GGauCUCCCAGaaa----UUCU- -5'
3578 3' -51.8 NC_001650.1 + 171382 0.77 0.600484
Target:  5'- uGGG-GGUCC-GGGGGGUCUUaAAGAc -3'
miRNA:   3'- uCCCaCCAGGaUCUCCCAGAAaUUCU- -5'
3578 3' -51.8 NC_001650.1 + 58163 0.72 0.853424
Target:  5'- gGGGGUGGUggcgauggcugCCgugGGAGGGUCUUc---- -3'
miRNA:   3'- -UCCCACCA-----------GGa--UCUCCCAGAAauucu -5'
3578 3' -51.8 NC_001650.1 + 4216 0.72 0.861313
Target:  5'- uGGGG-GGUCaUGGGGGGUCUU--AGGu -3'
miRNA:   3'- -UCCCaCCAGgAUCUCCCAGAAauUCU- -5'
3578 3' -51.8 NC_001650.1 + 170923 0.72 0.861313
Target:  5'- uGGGG-GGUCaUGGGGGGUCUU--AGGu -3'
miRNA:   3'- -UCCCaCCAGgAUCUCCCAGAAauUCU- -5'
3578 3' -51.8 NC_001650.1 + 43668 0.69 0.951443
Target:  5'- cGGGGUGGcgcgCUcggUAGAGGGUUgccagUGAGGc -3'
miRNA:   3'- -UCCCACCa---GG---AUCUCCCAGaa---AUUCU- -5'
3578 3' -51.8 NC_001650.1 + 148457 0.69 0.959313
Target:  5'- uGGGcaauGUGGUCUgggguuuaggAGAGGGUCUUgGGGGg -3'
miRNA:   3'- -UCC----CACCAGGa---------UCUCCCAGAAaUUCU- -5'
3578 3' -51.8 NC_001650.1 + 70768 0.66 0.993553
Target:  5'- uGGuGG-GGUCgUuGAGGGUCUUguAGAu -3'
miRNA:   3'- -UC-CCaCCAGgAuCUCCCAGAAauUCU- -5'
3578 3' -51.8 NC_001650.1 + 4899 1.09 0.008185
Target:  5'- cAGGGUGGUCCUAGAGGGUCUUUAAGAc -3'
miRNA:   3'- -UCCCACCAGGAUCUCCCAGAAAUUCU- -5'
3578 3' -51.8 NC_001650.1 + 85740 0.8 0.450742
Target:  5'- cAGGGUGGUCUUGGAGGGggagUUAuAGAg -3'
miRNA:   3'- -UCCCACCAGGAUCUCCCaga-AAU-UCU- -5'
3578 3' -51.8 NC_001650.1 + 181407 0.71 0.890655
Target:  5'- cGGG-GGUCCaAGGGGGUUggcaGAGAu -3'
miRNA:   3'- uCCCaCCAGGaUCUCCCAGaaa-UUCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.